Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29955 and ABIE40_RS29960 are separated by 88 nucleotides ABIE40_RS29960 and ABIE40_RS29965 are separated by 271 nucleotides ABIE40_RS29965 and ABIE40_RS29970 are separated by 636 nucleotides
ABIE40_RS29955: ABIE40_RS29955 - alpha/beta hydrolase, at 681,019 to 681,408
_RS29955
ABIE40_RS29960: ABIE40_RS29960 - AraC family transcriptional regulator, at 681,497 to 681,682
_RS29960
ABIE40_RS29965: ABIE40_RS29965 - DUF1778 domain-containing protein, at 681,954 to 682,244
_RS29965
ABIE40_RS29970: ABIE40_RS29970 - DHA2 family efflux MFS transporter permease subunit, at 682,881 to 684,455
_RS29970
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 680.957 kb on - strand at 681.023 kb on - strand at 681.023 kb on - strand at 681.086 kb on + strand, within ABIE40_RS29955 at 681.087 kb on - strand, within ABIE40_RS29955 at 681.087 kb on - strand, within ABIE40_RS29955 at 681.087 kb on - strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.136 kb on + strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.137 kb on - strand, within ABIE40_RS29955 at 681.144 kb on + strand, within ABIE40_RS29955 at 681.145 kb on - strand, within ABIE40_RS29955 at 681.156 kb on + strand, within ABIE40_RS29955 at 681.271 kb on - strand, within ABIE40_RS29955 at 681.378 kb on - strand at 681.410 kb on + strand at 681.410 kb on + strand at 681.411 kb on - strand at 681.465 kb on + strand at 681.466 kb on - strand at 681.466 kb on - strand at 681.466 kb on - strand at 681.490 kb on + strand at 681.490 kb on + strand at 681.491 kb on - strand at 681.491 kb on - strand at 681.491 kb on - strand at 681.491 kb on - strand at 681.624 kb on + strand, within ABIE40_RS29960 at 681.625 kb on - strand, within ABIE40_RS29960 at 681.625 kb on - strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.628 kb on + strand, within ABIE40_RS29960 at 681.629 kb on - strand, within ABIE40_RS29960 at 681.629 kb on - strand, within ABIE40_RS29960 at 681.629 kb on - strand, within ABIE40_RS29960 at 681.681 kb on - strand at 681.738 kb on + strand at 681.739 kb on - strand at 681.739 kb on - strand at 681.754 kb on + strand at 681.755 kb on - strand at 681.855 kb on + strand at 681.868 kb on + strand at 681.869 kb on - strand at 681.870 kb on + strand at 681.870 kb on + strand at 681.894 kb on - strand at 681.940 kb on + strand at 681.971 kb on + strand at 681.971 kb on + strand at 681.971 kb on + strand at 681.972 kb on - strand at 681.972 kb on - strand at 681.972 kb on - strand at 681.976 kb on + strand at 681.977 kb on - strand at 681.998 kb on + strand, within ABIE40_RS29965 at 682.058 kb on + strand, within ABIE40_RS29965 at 682.058 kb on + strand, within ABIE40_RS29965 at 682.135 kb on + strand, within ABIE40_RS29965 at 682.136 kb on - strand, within ABIE40_RS29965 at 682.191 kb on - strand, within ABIE40_RS29965 at 682.248 kb on + strand at 682.248 kb on + strand at 682.249 kb on - strand at 682.275 kb on + strand at 682.410 kb on - strand at 682.410 kb on - strand at 682.415 kb on + strand at 682.415 kb on + strand at 682.415 kb on + strand at 682.415 kb on + strand at 682.415 kb on + strand at 682.416 kb on - strand at 682.416 kb on - strand at 682.416 kb on - strand at 682.424 kb on + strand at 682.425 kb on - strand at 682.601 kb on + strand at 682.646 kb on + strand at 682.646 kb on + strand at 682.647 kb on - strand at 682.647 kb on - strand at 682.649 kb on - strand at 682.663 kb on + strand at 682.663 kb on + strand at 682.663 kb on + strand at 682.663 kb on + strand at 682.663 kb on + strand at 682.664 kb on - strand at 682.664 kb on - strand at 682.664 kb on - strand at 682.664 kb on - strand at 682.664 kb on - strand at 682.664 kb on - strand at 682.665 kb on + strand at 682.665 kb on + strand at 682.665 kb on + strand at 682.666 kb on - strand at 682.666 kb on - strand at 682.666 kb on - strand at 682.666 kb on - strand at 682.666 kb on - strand at 682.849 kb on + strand at 682.850 kb on - strand at 682.874 kb on + strand at 682.944 kb on + strand at 682.944 kb on + strand at 682.944 kb on + strand at 682.944 kb on + strand at 682.944 kb on + strand at 682.944 kb on + strand at 682.945 kb on - strand at 682.945 kb on - strand at 682.945 kb on - strand at 682.956 kb on - strand at 682.956 kb on - strand at 682.956 kb on - strand at 682.959 kb on + strand at 682.967 kb on + strand at 682.967 kb on + strand at 683.082 kb on + strand, within ABIE40_RS29970 at 683.180 kb on - strand, within ABIE40_RS29970 at 683.184 kb on + strand, within ABIE40_RS29970 at 683.184 kb on + strand, within ABIE40_RS29970 at 683.185 kb on - strand, within ABIE40_RS29970 at 683.193 kb on + strand, within ABIE40_RS29970 at 683.194 kb on - strand, within ABIE40_RS29970 at 683.194 kb on - strand, within ABIE40_RS29970 at 683.242 kb on - strand, within ABIE40_RS29970
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 680,957 - +0.4 681,023 - -0.3 681,023 - +0.8 681,086 + ABIE40_RS29955 0.17 -0.1 681,087 - ABIE40_RS29955 0.17 +1.7 681,087 - ABIE40_RS29955 0.17 -1.2 681,087 - ABIE40_RS29955 0.17 -0.1 681,136 + ABIE40_RS29955 0.30 -1.2 681,136 + ABIE40_RS29955 0.30 -0.2 681,136 + ABIE40_RS29955 0.30 +0.1 681,136 + ABIE40_RS29955 0.30 -2.6 681,137 - ABIE40_RS29955 0.30 -0.4 681,137 - ABIE40_RS29955 0.30 +0.5 681,137 - ABIE40_RS29955 0.30 +1.8 681,137 - ABIE40_RS29955 0.30 +0.1 681,144 + ABIE40_RS29955 0.32 -0.5 681,145 - ABIE40_RS29955 0.32 +0.9 681,156 + ABIE40_RS29955 0.35 +0.5 681,271 - ABIE40_RS29955 0.65 -1.0 681,378 - -0.4 681,410 + +0.1 681,410 + +0.2 681,411 - +0.5 681,465 + -2.6 681,466 - +0.6 681,466 - -1.5 681,466 - +0.7 681,490 + +0.5 681,490 + -0.7 681,491 - -2.6 681,491 - -0.4 681,491 - +0.2 681,491 - -1.2 681,624 + ABIE40_RS29960 0.68 +2.0 681,625 - ABIE40_RS29960 0.69 -3.1 681,625 - ABIE40_RS29960 0.69 -0.7 681,628 + ABIE40_RS29960 0.70 -1.5 681,628 + ABIE40_RS29960 0.70 -0.6 681,628 + ABIE40_RS29960 0.70 -0.8 681,628 + ABIE40_RS29960 0.70 -0.5 681,629 - ABIE40_RS29960 0.71 -0.1 681,629 - ABIE40_RS29960 0.71 -1.1 681,629 - ABIE40_RS29960 0.71 +0.2 681,681 - -0.5 681,738 + -1.5 681,739 - +0.4 681,739 - +0.8 681,754 + +0.1 681,755 - -0.9 681,855 + +0.6 681,868 + -0.8 681,869 - +0.3 681,870 + -0.7 681,870 + +0.5 681,894 - -1.4 681,940 + +0.9 681,971 + -0.5 681,971 + -0.4 681,971 + +2.2 681,972 - -0.8 681,972 - -1.6 681,972 - +0.9 681,976 + +0.0 681,977 - +0.9 681,998 + ABIE40_RS29965 0.15 -0.1 682,058 + ABIE40_RS29965 0.36 +2.8 682,058 + ABIE40_RS29965 0.36 -3.0 682,135 + ABIE40_RS29965 0.62 -0.4 682,136 - ABIE40_RS29965 0.63 +1.0 682,191 - ABIE40_RS29965 0.81 +0.7 682,248 + +0.9 682,248 + -0.1 682,249 - -1.1 682,275 + -0.7 682,410 - +0.0 682,410 - +0.5 682,415 + +0.2 682,415 + -1.4 682,415 + -1.2 682,415 + +2.9 682,415 + -3.6 682,416 - +0.3 682,416 - +0.5 682,416 - -0.5 682,424 + -0.1 682,425 - -0.7 682,601 + -0.8 682,646 + -1.6 682,646 + +0.6 682,647 - +1.1 682,647 - +0.5 682,649 - +0.8 682,663 + +1.0 682,663 + +0.5 682,663 + +1.5 682,663 + -2.2 682,663 + -0.2 682,664 - -1.1 682,664 - -2.0 682,664 - -0.1 682,664 - +2.5 682,664 - -1.4 682,664 - +0.5 682,665 + -1.0 682,665 + -1.2 682,665 + -0.4 682,666 - -2.4 682,666 - -1.1 682,666 - -0.1 682,666 - +0.5 682,666 - +1.1 682,849 + +0.6 682,850 - +0.2 682,874 + -1.5 682,944 + +0.2 682,944 + -1.3 682,944 + +1.2 682,944 + +0.9 682,944 + -0.2 682,944 + +0.2 682,945 - -0.2 682,945 - -0.7 682,945 - -0.0 682,956 - -0.1 682,956 - -0.4 682,956 - -0.9 682,959 + -0.2 682,967 + +2.5 682,967 + -1.1 683,082 + ABIE40_RS29970 0.13 -1.5 683,180 - ABIE40_RS29970 0.19 +0.6 683,184 + ABIE40_RS29970 0.19 -0.1 683,184 + ABIE40_RS29970 0.19 -0.3 683,185 - ABIE40_RS29970 0.19 -1.8 683,193 + ABIE40_RS29970 0.20 +1.3 683,194 - ABIE40_RS29970 0.20 -0.2 683,194 - ABIE40_RS29970 0.20 -1.1 683,242 - ABIE40_RS29970 0.23 +0.0
Or see this region's nucleotide sequence