Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29550 and ABIE40_RS29555 are separated by 111 nucleotides ABIE40_RS29555 and ABIE40_RS29560 are separated by 34 nucleotides ABIE40_RS29560 and ABIE40_RS29565 are separated by 143 nucleotides
ABIE40_RS29550: ABIE40_RS29550 - response regulator transcription factor, at 603,447 to 604,187
_RS29550
ABIE40_RS29555: ABIE40_RS29555 - 4-oxalocrotonate tautomerase family protein, at 604,299 to 604,514
_RS29555
ABIE40_RS29560: ABIE40_RS29560 - SMP-30/gluconolactonase/LRE family protein, at 604,549 to 605,379
_RS29560
ABIE40_RS29565: ABIE40_RS29565 - ABC transporter substrate-binding protein, at 605,523 to 606,536
_RS29565
Position (kb) 604
605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 603.594 kb on + strand, within ABIE40_RS29550 at 603.594 kb on + strand, within ABIE40_RS29550 at 603.595 kb on - strand, within ABIE40_RS29550 at 603.677 kb on + strand, within ABIE40_RS29550 at 603.677 kb on + strand, within ABIE40_RS29550 at 603.677 kb on + strand, within ABIE40_RS29550 at 603.711 kb on + strand, within ABIE40_RS29550 at 603.712 kb on - strand, within ABIE40_RS29550 at 603.712 kb on - strand, within ABIE40_RS29550 at 603.753 kb on + strand, within ABIE40_RS29550 at 603.754 kb on - strand, within ABIE40_RS29550 at 603.759 kb on + strand, within ABIE40_RS29550 at 603.759 kb on + strand, within ABIE40_RS29550 at 603.760 kb on - strand, within ABIE40_RS29550 at 603.760 kb on - strand, within ABIE40_RS29550 at 603.903 kb on + strand, within ABIE40_RS29550 at 603.903 kb on + strand, within ABIE40_RS29550 at 603.904 kb on - strand, within ABIE40_RS29550 at 603.904 kb on - strand, within ABIE40_RS29550 at 603.972 kb on - strand, within ABIE40_RS29550 at 604.006 kb on - strand, within ABIE40_RS29550 at 604.109 kb on + strand, within ABIE40_RS29550 at 604.109 kb on + strand, within ABIE40_RS29550 at 604.109 kb on + strand, within ABIE40_RS29550 at 604.206 kb on - strand at 604.206 kb on - strand at 604.206 kb on - strand at 604.233 kb on + strand at 604.259 kb on + strand at 604.260 kb on - strand at 604.277 kb on - strand at 604.299 kb on - strand at 604.313 kb on + strand at 604.453 kb on - strand, within ABIE40_RS29555 at 604.453 kb on - strand, within ABIE40_RS29555 at 604.494 kb on + strand at 604.494 kb on + strand at 604.494 kb on + strand at 604.495 kb on - strand at 604.648 kb on + strand, within ABIE40_RS29560 at 604.648 kb on + strand, within ABIE40_RS29560 at 604.648 kb on + strand, within ABIE40_RS29560 at 604.648 kb on + strand, within ABIE40_RS29560 at 604.648 kb on + strand, within ABIE40_RS29560 at 604.649 kb on - strand, within ABIE40_RS29560 at 604.651 kb on - strand, within ABIE40_RS29560 at 604.713 kb on + strand, within ABIE40_RS29560 at 604.714 kb on - strand, within ABIE40_RS29560 at 604.813 kb on + strand, within ABIE40_RS29560 at 604.873 kb on + strand, within ABIE40_RS29560 at 604.873 kb on + strand, within ABIE40_RS29560 at 604.873 kb on + strand, within ABIE40_RS29560 at 604.874 kb on - strand, within ABIE40_RS29560 at 604.989 kb on + strand, within ABIE40_RS29560 at 605.073 kb on + strand, within ABIE40_RS29560 at 605.074 kb on - strand, within ABIE40_RS29560 at 605.178 kb on + strand, within ABIE40_RS29560 at 605.190 kb on + strand, within ABIE40_RS29560 at 605.191 kb on - strand, within ABIE40_RS29560 at 605.191 kb on - strand, within ABIE40_RS29560 at 605.191 kb on - strand, within ABIE40_RS29560 at 605.191 kb on - strand, within ABIE40_RS29560 at 605.315 kb on - strand at 605.319 kb on + strand at 605.340 kb on + strand at 605.340 kb on + strand at 605.340 kb on + strand at 605.341 kb on - strand at 605.397 kb on + strand at 605.622 kb on + strand at 605.623 kb on - strand at 605.623 kb on - strand at 605.661 kb on + strand, within ABIE40_RS29565 at 605.661 kb on + strand, within ABIE40_RS29565 at 605.661 kb on + strand, within ABIE40_RS29565 at 605.662 kb on - strand, within ABIE40_RS29565 at 605.662 kb on - strand, within ABIE40_RS29565 at 605.721 kb on - strand, within ABIE40_RS29565 at 605.784 kb on + strand, within ABIE40_RS29565 at 605.784 kb on + strand, within ABIE40_RS29565 at 605.858 kb on + strand, within ABIE40_RS29565 at 605.859 kb on - strand, within ABIE40_RS29565 at 605.882 kb on + strand, within ABIE40_RS29565 at 605.882 kb on + strand, within ABIE40_RS29565 at 605.904 kb on + strand, within ABIE40_RS29565 at 605.972 kb on + strand, within ABIE40_RS29565 at 605.973 kb on - strand, within ABIE40_RS29565 at 605.973 kb on - strand, within ABIE40_RS29565 at 605.973 kb on - strand, within ABIE40_RS29565 at 606.157 kb on - strand, within ABIE40_RS29565 at 606.173 kb on + strand, within ABIE40_RS29565 at 606.193 kb on - strand, within ABIE40_RS29565 at 606.303 kb on + strand, within ABIE40_RS29565 at 606.303 kb on + strand, within ABIE40_RS29565
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 603,594 + ABIE40_RS29550 0.20 +0.2 603,594 + ABIE40_RS29550 0.20 -1.6 603,595 - ABIE40_RS29550 0.20 -1.4 603,677 + ABIE40_RS29550 0.31 -0.8 603,677 + ABIE40_RS29550 0.31 -0.2 603,677 + ABIE40_RS29550 0.31 -0.2 603,711 + ABIE40_RS29550 0.36 +0.8 603,712 - ABIE40_RS29550 0.36 +0.7 603,712 - ABIE40_RS29550 0.36 +1.3 603,753 + ABIE40_RS29550 0.41 +0.2 603,754 - ABIE40_RS29550 0.41 +1.0 603,759 + ABIE40_RS29550 0.42 -1.0 603,759 + ABIE40_RS29550 0.42 +0.6 603,760 - ABIE40_RS29550 0.42 +0.4 603,760 - ABIE40_RS29550 0.42 +0.2 603,903 + ABIE40_RS29550 0.62 -0.5 603,903 + ABIE40_RS29550 0.62 +2.2 603,904 - ABIE40_RS29550 0.62 +0.8 603,904 - ABIE40_RS29550 0.62 -0.4 603,972 - ABIE40_RS29550 0.71 +1.1 604,006 - ABIE40_RS29550 0.75 +0.6 604,109 + ABIE40_RS29550 0.89 +0.3 604,109 + ABIE40_RS29550 0.89 -0.3 604,109 + ABIE40_RS29550 0.89 -0.3 604,206 - -1.4 604,206 - -0.6 604,206 - -0.5 604,233 + +0.1 604,259 + -1.1 604,260 - -0.1 604,277 - +1.0 604,299 - +0.4 604,313 + -1.1 604,453 - ABIE40_RS29555 0.71 +0.5 604,453 - ABIE40_RS29555 0.71 -0.1 604,494 + -0.1 604,494 + +0.3 604,494 + -0.1 604,495 - -0.3 604,648 + ABIE40_RS29560 0.12 -0.7 604,648 + ABIE40_RS29560 0.12 -0.2 604,648 + ABIE40_RS29560 0.12 +3.1 604,648 + ABIE40_RS29560 0.12 -0.9 604,648 + ABIE40_RS29560 0.12 +1.5 604,649 - ABIE40_RS29560 0.12 +0.2 604,651 - ABIE40_RS29560 0.12 +0.1 604,713 + ABIE40_RS29560 0.20 +0.4 604,714 - ABIE40_RS29560 0.20 +0.7 604,813 + ABIE40_RS29560 0.32 -0.9 604,873 + ABIE40_RS29560 0.39 -0.0 604,873 + ABIE40_RS29560 0.39 -0.4 604,873 + ABIE40_RS29560 0.39 -0.0 604,874 - ABIE40_RS29560 0.39 +0.1 604,989 + ABIE40_RS29560 0.53 -0.8 605,073 + ABIE40_RS29560 0.63 +0.9 605,074 - ABIE40_RS29560 0.63 +0.2 605,178 + ABIE40_RS29560 0.76 +1.1 605,190 + ABIE40_RS29560 0.77 -2.1 605,191 - ABIE40_RS29560 0.77 -1.2 605,191 - ABIE40_RS29560 0.77 +0.5 605,191 - ABIE40_RS29560 0.77 -0.9 605,191 - ABIE40_RS29560 0.77 +0.8 605,315 - +0.3 605,319 + +0.8 605,340 + -1.3 605,340 + +0.5 605,340 + -3.2 605,341 - +0.1 605,397 + +0.3 605,622 + -1.1 605,623 - +0.3 605,623 - -0.4 605,661 + ABIE40_RS29565 0.14 -0.6 605,661 + ABIE40_RS29565 0.14 -1.8 605,661 + ABIE40_RS29565 0.14 +0.3 605,662 - ABIE40_RS29565 0.14 -1.3 605,662 - ABIE40_RS29565 0.14 -1.4 605,721 - ABIE40_RS29565 0.20 -0.6 605,784 + ABIE40_RS29565 0.26 -1.1 605,784 + ABIE40_RS29565 0.26 -0.8 605,858 + ABIE40_RS29565 0.33 -0.6 605,859 - ABIE40_RS29565 0.33 -1.5 605,882 + ABIE40_RS29565 0.35 -0.3 605,882 + ABIE40_RS29565 0.35 -1.1 605,904 + ABIE40_RS29565 0.38 -1.5 605,972 + ABIE40_RS29565 0.44 -0.4 605,973 - ABIE40_RS29565 0.44 +1.3 605,973 - ABIE40_RS29565 0.44 +1.8 605,973 - ABIE40_RS29565 0.44 -0.9 606,157 - ABIE40_RS29565 0.63 -2.4 606,173 + ABIE40_RS29565 0.64 +0.3 606,193 - ABIE40_RS29565 0.66 -0.2 606,303 + ABIE40_RS29565 0.77 +0.8 606,303 + ABIE40_RS29565 0.77 -0.0
Or see this region's nucleotide sequence