Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29435 and ABIE40_RS29440 overlap by 29 nucleotides ABIE40_RS29440 and ABIE40_RS29445 are separated by 397 nucleotides ABIE40_RS29445 and ABIE40_RS29450 are separated by 57 nucleotides ABIE40_RS29450 and ABIE40_RS29455 are separated by 274 nucleotides
ABIE40_RS29435: ABIE40_RS29435 - carboxymuconolactone decarboxylase family protein, at 585,183 to 585,623
_RS29435
ABIE40_RS29440: ABIE40_RS29440 - transcriptional regulator, at 585,595 to 585,726
_RS29440
ABIE40_RS29445: ABIE40_RS29445 - helix-turn-helix transcriptional regulator, at 586,124 to 586,330
_RS29445
ABIE40_RS29450: ABIE40_RS29450 - hypothetical protein, at 586,388 to 586,558
_RS29450
ABIE40_RS29455: ABIE40_RS29455 - dienelactone hydrolase family protein, at 586,833 to 587,429
_RS29455
Position (kb) 586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 585.243 kb on - strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.307 kb on + strand, within ABIE40_RS29435 at 585.308 kb on - strand, within ABIE40_RS29435 at 585.308 kb on - strand, within ABIE40_RS29435 at 585.474 kb on + strand, within ABIE40_RS29435 at 585.474 kb on + strand, within ABIE40_RS29435 at 585.474 kb on + strand, within ABIE40_RS29435 at 585.474 kb on + strand, within ABIE40_RS29435 at 585.474 kb on + strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.475 kb on - strand, within ABIE40_RS29435 at 585.562 kb on + strand, within ABIE40_RS29435 at 585.562 kb on + strand, within ABIE40_RS29435 at 585.562 kb on + strand, within ABIE40_RS29435 at 585.562 kb on + strand, within ABIE40_RS29435 at 585.563 kb on + strand, within ABIE40_RS29435 at 585.563 kb on - strand, within ABIE40_RS29435 at 585.606 kb on - strand at 585.606 kb on - strand at 585.606 kb on - strand at 585.606 kb on - strand at 585.606 kb on - strand at 585.896 kb on + strand at 586.069 kb on + strand at 586.069 kb on + strand at 586.069 kb on + strand at 586.070 kb on - strand at 586.070 kb on - strand at 586.071 kb on + strand at 586.071 kb on + strand at 586.072 kb on - strand at 586.072 kb on - strand at 586.242 kb on + strand, within ABIE40_RS29445 at 586.242 kb on + strand, within ABIE40_RS29445 at 586.242 kb on + strand, within ABIE40_RS29445 at 586.243 kb on - strand, within ABIE40_RS29445 at 586.243 kb on - strand, within ABIE40_RS29445 at 586.255 kb on + strand, within ABIE40_RS29445 at 586.318 kb on + strand at 586.318 kb on + strand at 586.318 kb on + strand at 586.318 kb on + strand at 586.319 kb on - strand at 586.319 kb on - strand at 586.319 kb on - strand at 586.319 kb on - strand at 586.331 kb on - strand at 586.366 kb on - strand at 586.366 kb on - strand at 586.366 kb on - strand at 586.390 kb on - strand at 586.553 kb on + strand at 586.554 kb on - strand at 586.554 kb on - strand at 586.554 kb on - strand at 586.585 kb on + strand at 586.585 kb on + strand at 586.586 kb on - strand at 586.586 kb on - strand at 586.587 kb on + strand at 586.595 kb on - strand at 586.637 kb on - strand at 586.637 kb on - strand at 586.681 kb on - strand at 586.689 kb on + strand at 586.689 kb on + strand at 586.689 kb on + strand at 586.689 kb on + strand at 586.689 kb on + strand at 586.690 kb on - strand at 586.708 kb on - strand at 586.838 kb on - strand at 586.838 kb on - strand at 586.838 kb on - strand at 587.222 kb on - strand, within ABIE40_RS29455 at 587.286 kb on + strand, within ABIE40_RS29455
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 585,243 - ABIE40_RS29435 0.14 +0.1 585,307 + ABIE40_RS29435 0.28 +0.1 585,307 + ABIE40_RS29435 0.28 -0.2 585,307 + ABIE40_RS29435 0.28 -0.0 585,307 + ABIE40_RS29435 0.28 +0.1 585,307 + ABIE40_RS29435 0.28 -3.1 585,307 + ABIE40_RS29435 0.28 -0.3 585,307 + ABIE40_RS29435 0.28 -1.0 585,308 - ABIE40_RS29435 0.28 +1.2 585,308 - ABIE40_RS29435 0.28 +0.6 585,474 + ABIE40_RS29435 0.66 -0.1 585,474 + ABIE40_RS29435 0.66 -0.2 585,474 + ABIE40_RS29435 0.66 +0.5 585,474 + ABIE40_RS29435 0.66 -0.4 585,474 + ABIE40_RS29435 0.66 +1.2 585,475 - ABIE40_RS29435 0.66 -0.4 585,475 - ABIE40_RS29435 0.66 +0.5 585,475 - ABIE40_RS29435 0.66 +0.1 585,475 - ABIE40_RS29435 0.66 +1.6 585,475 - ABIE40_RS29435 0.66 +0.2 585,475 - ABIE40_RS29435 0.66 +0.1 585,475 - ABIE40_RS29435 0.66 -0.0 585,562 + ABIE40_RS29435 0.86 -1.5 585,562 + ABIE40_RS29435 0.86 -0.1 585,562 + ABIE40_RS29435 0.86 -0.9 585,562 + ABIE40_RS29435 0.86 +0.3 585,563 + ABIE40_RS29435 0.86 -1.0 585,563 - ABIE40_RS29435 0.86 -0.4 585,606 - -1.6 585,606 - -1.4 585,606 - +1.2 585,606 - +1.0 585,606 - -1.0 585,896 + -0.9 586,069 + +1.0 586,069 + +1.2 586,069 + +1.2 586,070 - +0.4 586,070 - +0.4 586,071 + +0.2 586,071 + +2.4 586,072 - -0.5 586,072 - -1.0 586,242 + ABIE40_RS29445 0.57 -0.8 586,242 + ABIE40_RS29445 0.57 +0.3 586,242 + ABIE40_RS29445 0.57 +0.8 586,243 - ABIE40_RS29445 0.57 +0.2 586,243 - ABIE40_RS29445 0.57 +1.1 586,255 + ABIE40_RS29445 0.63 +1.7 586,318 + -0.0 586,318 + -0.6 586,318 + +0.6 586,318 + -0.4 586,319 - -0.1 586,319 - +0.4 586,319 - +1.0 586,319 - +1.3 586,331 - -1.8 586,366 - +0.3 586,366 - +0.3 586,366 - -2.3 586,390 - +0.4 586,553 + -0.7 586,554 - +0.7 586,554 - +0.1 586,554 - -0.3 586,585 + -0.9 586,585 + +1.1 586,586 - +1.6 586,586 - -0.6 586,587 + -1.8 586,595 - -0.0 586,637 - -0.1 586,637 - +1.3 586,681 - -0.4 586,689 + +2.1 586,689 + +0.8 586,689 + +0.0 586,689 + -0.3 586,689 + +0.6 586,690 - +0.8 586,708 - +0.6 586,838 - -0.6 586,838 - -1.0 586,838 - +0.3 587,222 - ABIE40_RS29455 0.65 +0.4 587,286 + ABIE40_RS29455 0.76 +0.7
Or see this region's nucleotide sequence