Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28420 and ABIE40_RS28425 are separated by 48 nucleotides ABIE40_RS28425 and ABIE40_RS28430 are separated by 177 nucleotides ABIE40_RS28430 and ABIE40_RS28435 are separated by 307 nucleotides
ABIE40_RS28420: ABIE40_RS28420 - 30S ribosomal protein S21, at 387,682 to 387,942
_RS28420
ABIE40_RS28425: ABIE40_RS28425 - GNAT family protein, at 387,991 to 388,524
_RS28425
ABIE40_RS28430: ABIE40_RS28430 - DUF982 domain-containing protein, at 388,702 to 389,013
_RS28430
ABIE40_RS28435: ABIE40_RS28435 - ferritin-like domain-containing protein, at 389,321 to 389,833
_RS28435
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 387.787 kb on + strand, within ABIE40_RS28420 at 387.788 kb on - strand, within ABIE40_RS28420 at 387.788 kb on - strand, within ABIE40_RS28420 at 387.966 kb on - strand at 387.966 kb on - strand at 387.977 kb on + strand at 387.978 kb on - strand at 388.100 kb on - strand, within ABIE40_RS28425 at 388.166 kb on - strand, within ABIE40_RS28425 at 388.308 kb on + strand, within ABIE40_RS28425 at 388.399 kb on + strand, within ABIE40_RS28425 at 388.399 kb on + strand, within ABIE40_RS28425 at 388.400 kb on - strand, within ABIE40_RS28425 at 388.400 kb on - strand, within ABIE40_RS28425 at 388.470 kb on + strand, within ABIE40_RS28425 at 388.470 kb on + strand, within ABIE40_RS28425 at 388.476 kb on + strand at 388.631 kb on - strand at 388.679 kb on - strand at 388.704 kb on - strand at 388.729 kb on + strand at 388.729 kb on + strand at 388.730 kb on - strand at 388.801 kb on + strand, within ABIE40_RS28430 at 388.843 kb on + strand, within ABIE40_RS28430 at 388.878 kb on - strand, within ABIE40_RS28430 at 388.931 kb on + strand, within ABIE40_RS28430 at 388.931 kb on + strand, within ABIE40_RS28430 at 388.977 kb on + strand, within ABIE40_RS28430 at 388.978 kb on - strand, within ABIE40_RS28430 at 389.040 kb on + strand at 389.041 kb on - strand at 389.041 kb on - strand at 389.056 kb on - strand at 389.058 kb on + strand at 389.059 kb on - strand at 389.132 kb on - strand at 389.132 kb on - strand at 389.304 kb on + strand at 389.660 kb on + strand, within ABIE40_RS28435 at 389.660 kb on + strand, within ABIE40_RS28435 at 389.662 kb on + strand, within ABIE40_RS28435 at 389.662 kb on + strand, within ABIE40_RS28435 at 389.662 kb on + strand, within ABIE40_RS28435 at 389.662 kb on + strand, within ABIE40_RS28435 at 389.663 kb on - strand, within ABIE40_RS28435 at 389.663 kb on - strand, within ABIE40_RS28435 at 389.895 kb on + strand at 389.986 kb on + strand at 389.986 kb on + strand at 389.987 kb on - strand at 389.987 kb on - strand at 389.987 kb on - strand at 389.990 kb on + strand at 389.990 kb on + strand at 389.991 kb on - strand at 389.991 kb on - strand at 389.991 kb on - strand at 389.991 kb on - strand at 389.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 387,787 + ABIE40_RS28420 0.40 -0.3 387,788 - ABIE40_RS28420 0.41 -0.8 387,788 - ABIE40_RS28420 0.41 +0.0 387,966 - -0.5 387,966 - -0.5 387,977 + -0.4 387,978 - -0.9 388,100 - ABIE40_RS28425 0.20 +0.1 388,166 - ABIE40_RS28425 0.33 +0.8 388,308 + ABIE40_RS28425 0.59 +2.2 388,399 + ABIE40_RS28425 0.76 -0.5 388,399 + ABIE40_RS28425 0.76 -0.7 388,400 - ABIE40_RS28425 0.77 +1.2 388,400 - ABIE40_RS28425 0.77 -0.4 388,470 + ABIE40_RS28425 0.90 +1.2 388,470 + ABIE40_RS28425 0.90 +0.4 388,476 + -1.6 388,631 - +2.7 388,679 - -0.6 388,704 - -0.4 388,729 + +0.4 388,729 + -1.3 388,730 - +0.2 388,801 + ABIE40_RS28430 0.32 +4.1 388,843 + ABIE40_RS28430 0.45 -0.1 388,878 - ABIE40_RS28430 0.56 -1.5 388,931 + ABIE40_RS28430 0.73 +0.2 388,931 + ABIE40_RS28430 0.73 -2.1 388,977 + ABIE40_RS28430 0.88 -0.3 388,978 - ABIE40_RS28430 0.88 -0.2 389,040 + +0.9 389,041 - -1.1 389,041 - -1.2 389,056 - +0.9 389,058 + +0.2 389,059 - +0.5 389,132 - -0.3 389,132 - -0.5 389,304 + +0.4 389,660 + ABIE40_RS28435 0.66 -1.3 389,660 + ABIE40_RS28435 0.66 -0.5 389,662 + ABIE40_RS28435 0.66 -0.9 389,662 + ABIE40_RS28435 0.66 +1.0 389,662 + ABIE40_RS28435 0.66 -1.6 389,662 + ABIE40_RS28435 0.66 -0.8 389,663 - ABIE40_RS28435 0.67 -1.7 389,663 - ABIE40_RS28435 0.67 -0.1 389,895 + -0.1 389,986 + -0.4 389,986 + -0.9 389,987 - +0.5 389,987 - -2.4 389,987 - +0.1 389,990 + +0.0 389,990 + +1.9 389,991 - -2.0 389,991 - -0.8 389,991 - +0.6 389,991 - +0.5 389,995 + +0.2
Or see this region's nucleotide sequence