Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS27805

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS27800 and ABIE40_RS27805 are separated by 472 nucleotidesABIE40_RS27805 and ABIE40_RS27810 are separated by 638 nucleotides ABIE40_RS27800: ABIE40_RS27800 - carbohydrate ABC transporter permease, at 271,499 to 272,320 _RS27800 ABIE40_RS27805: ABIE40_RS27805 - hypothetical protein, at 272,793 to 273,022 _RS27805 ABIE40_RS27810: ABIE40_RS27810 - L,D-transpeptidase, at 273,661 to 274,635 _RS27810 Position (kb) 272 273 274Strain fitness (log2 ratio) -2 -1 0 1 2at 271.862 kb on + strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.862 kb on + strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.863 kb on - strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.871 kb on + strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 271.872 kb on - strand, within ABIE40_RS27800at 272.202 kb on + strand, within ABIE40_RS27800at 272.202 kb on + strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.203 kb on - strand, within ABIE40_RS27800at 272.273 kb on + strandat 272.273 kb on + strandat 272.273 kb on + strandat 272.532 kb on + strandat 272.533 kb on - strandat 272.533 kb on - strandat 272.533 kb on - strandat 272.549 kb on + strandat 272.550 kb on - strandat 272.550 kb on - strandat 272.550 kb on - strandat 272.585 kb on - strandat 272.665 kb on + strandat 272.666 kb on - strandat 272.703 kb on + strandat 272.748 kb on + strandat 272.749 kb on - strandat 272.749 kb on - strandat 272.749 kb on - strandat 272.769 kb on - strandat 272.769 kb on - strandat 272.772 kb on - strandat 272.780 kb on + strandat 272.780 kb on + strandat 272.781 kb on - strandat 272.785 kb on - strandat 272.785 kb on - strandat 272.785 kb on - strandat 272.827 kb on - strand, within ABIE40_RS27805at 272.882 kb on + strand, within ABIE40_RS27805at 272.882 kb on + strand, within ABIE40_RS27805at 272.882 kb on + strand, within ABIE40_RS27805at 272.927 kb on + strand, within ABIE40_RS27805at 272.927 kb on + strand, within ABIE40_RS27805at 272.927 kb on + strand, within ABIE40_RS27805at 272.928 kb on - strand, within ABIE40_RS27805at 272.932 kb on + strand, within ABIE40_RS27805at 273.020 kb on + strandat 273.041 kb on + strandat 273.078 kb on + strandat 273.078 kb on + strandat 273.079 kb on - strandat 273.079 kb on - strandat 273.100 kb on + strandat 273.101 kb on - strandat 273.135 kb on + strandat 273.144 kb on - strandat 273.144 kb on - strandat 273.288 kb on + strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.289 kb on - strandat 273.369 kb on + strandat 273.369 kb on + strandat 273.369 kb on + strandat 273.369 kb on + strandat 273.369 kb on + strandat 273.370 kb on - strandat 273.441 kb on + strandat 273.660 kb on + strandat 273.801 kb on - strand, within ABIE40_RS27810at 273.815 kb on + strand, within ABIE40_RS27810at 273.816 kb on - strand, within ABIE40_RS27810at 273.963 kb on - strand, within ABIE40_RS27810at 274.000 kb on + strand, within ABIE40_RS27810at 274.000 kb on + strand, within ABIE40_RS27810at 274.000 kb on + strand, within ABIE40_RS27810at 274.000 kb on + strand, within ABIE40_RS27810at 274.001 kb on - strand, within ABIE40_RS27810at 274.002 kb on + strand, within ABIE40_RS27810at 274.003 kb on - strand, within ABIE40_RS27810at 274.003 kb on - strand, within ABIE40_RS27810

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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271,862 + ABIE40_RS27800 0.44 +0.4
271,862 + ABIE40_RS27800 0.44 +1.1
271,862 + ABIE40_RS27800 0.44 -1.8
271,863 - ABIE40_RS27800 0.44 -0.7
271,863 - ABIE40_RS27800 0.44 +0.6
271,863 - ABIE40_RS27800 0.44 -0.2
271,871 + ABIE40_RS27800 0.45 -0.2
271,871 + ABIE40_RS27800 0.45 -1.0
271,871 + ABIE40_RS27800 0.45 +0.8
271,871 + ABIE40_RS27800 0.45 +0.6
271,872 - ABIE40_RS27800 0.45 -0.1
271,872 - ABIE40_RS27800 0.45 -0.5
271,872 - ABIE40_RS27800 0.45 -0.6
272,202 + ABIE40_RS27800 0.86 -0.9
272,202 + ABIE40_RS27800 0.86 -0.3
272,203 - ABIE40_RS27800 0.86 +0.8
272,203 - ABIE40_RS27800 0.86 +0.7
272,203 - ABIE40_RS27800 0.86 -0.0
272,273 + +0.7
272,273 + +0.7
272,273 + +0.7
272,532 + +0.2
272,533 - -1.3
272,533 - +0.2
272,533 - -0.2
272,549 + +1.2
272,550 - +1.2
272,550 - +0.1
272,550 - +1.0
272,585 - +0.3
272,665 + -0.7
272,666 - +1.2
272,703 + +0.5
272,748 + -0.4
272,749 - +0.5
272,749 - +1.3
272,749 - +0.5
272,769 - +0.2
272,769 - -1.6
272,772 - -0.8
272,780 + -0.2
272,780 + -0.0
272,781 - -0.8
272,785 - +0.3
272,785 - +0.2
272,785 - +0.2
272,827 - ABIE40_RS27805 0.15 +1.2
272,882 + ABIE40_RS27805 0.39 +1.6
272,882 + ABIE40_RS27805 0.39 +0.4
272,882 + ABIE40_RS27805 0.39 -0.9
272,927 + ABIE40_RS27805 0.58 +1.0
272,927 + ABIE40_RS27805 0.58 -0.7
272,927 + ABIE40_RS27805 0.58 +1.2
272,928 - ABIE40_RS27805 0.59 +0.4
272,932 + ABIE40_RS27805 0.60 +0.4
273,020 + +0.5
273,041 + -1.0
273,078 + -0.6
273,078 + -1.4
273,079 - -0.4
273,079 - +0.7
273,100 + +0.2
273,101 - -1.5
273,135 + -0.1
273,144 - -0.8
273,144 - -0.2
273,288 + +0.3
273,289 - -1.5
273,289 - -0.5
273,289 - +0.4
273,289 - +0.1
273,289 - -0.0
273,369 + -0.4
273,369 + +1.7
273,369 + +0.3
273,369 + +0.9
273,369 + -0.3
273,370 - -1.3
273,441 + +0.5
273,660 + +1.0
273,801 - ABIE40_RS27810 0.14 -1.2
273,815 + ABIE40_RS27810 0.16 +2.2
273,816 - ABIE40_RS27810 0.16 -0.2
273,963 - ABIE40_RS27810 0.31 +0.7
274,000 + ABIE40_RS27810 0.35 +0.0
274,000 + ABIE40_RS27810 0.35 +1.0
274,000 + ABIE40_RS27810 0.35 -1.0
274,000 + ABIE40_RS27810 0.35 +0.1
274,001 - ABIE40_RS27810 0.35 -0.7
274,002 + ABIE40_RS27810 0.35 +0.5
274,003 - ABIE40_RS27810 0.35 +0.1
274,003 - ABIE40_RS27810 0.35 -0.5

Or see this region's nucleotide sequence