Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26720

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS26705 and ABIE40_RS26710 are separated by 462 nucleotidesABIE40_RS26710 and ABIE40_RS26715 are separated by 127 nucleotidesABIE40_RS26715 and ABIE40_RS26720 are separated by 118 nucleotidesABIE40_RS26720 and ABIE40_RS26725 are separated by 635 nucleotides ABIE40_RS26705: ABIE40_RS26705 - response regulator, at 63,002 to 63,529 _RS26705 ABIE40_RS26710: ABIE40_RS26710 - tRNA-Ile, at 63,992 to 64,065 _RS26710 ABIE40_RS26715: ABIE40_RS26715 - hypothetical protein, at 64,193 to 64,336 _RS26715 ABIE40_RS26720: ABIE40_RS26720 - hypothetical protein, at 64,455 to 64,619 _RS26720 ABIE40_RS26725: ABIE40_RS26725 - mechanosensitive ion channel domain-containing protein, at 65,255 to 66,064 _RS26725 Position (kb) 64 65Strain fitness (log2 ratio) -2 -1 0 1 2at 63.479 kb on + strandat 63.479 kb on + strandat 63.480 kb on - strandat 63.509 kb on - strandat 63.509 kb on - strandat 63.510 kb on + strandat 63.510 kb on + strandat 63.511 kb on - strandat 63.518 kb on - strandat 63.518 kb on - strandat 63.518 kb on - strandat 63.579 kb on + strandat 63.579 kb on + strandat 63.580 kb on - strandat 63.580 kb on - strandat 63.580 kb on - strandat 63.586 kb on - strandat 63.610 kb on - strandat 63.635 kb on - strandat 63.724 kb on + strandat 63.741 kb on + strandat 63.762 kb on - strandat 63.762 kb on - strandat 63.975 kb on + strandat 63.976 kb on - strandat 63.997 kb on + strandat 63.997 kb on + strandat 64.083 kb on + strandat 64.336 kb on + strandat 64.337 kb on - strandat 64.337 kb on - strandat 64.383 kb on - strandat 64.407 kb on + strandat 64.408 kb on - strandat 64.491 kb on + strand, within ABIE40_RS26720at 64.492 kb on - strand, within ABIE40_RS26720at 64.634 kb on + strandat 64.660 kb on + strandat 64.660 kb on + strandat 64.660 kb on + strandat 64.660 kb on + strandat 64.661 kb on - strandat 64.661 kb on - strandat 64.664 kb on + strandat 64.664 kb on + strandat 64.664 kb on + strandat 64.664 kb on + strandat 64.665 kb on - strandat 64.665 kb on - strandat 64.665 kb on - strandat 64.737 kb on + strandat 64.737 kb on + strandat 64.741 kb on + strandat 64.741 kb on + strandat 64.741 kb on + strandat 64.741 kb on + strandat 64.746 kb on + strandat 64.746 kb on + strandat 64.746 kb on + strandat 64.747 kb on - strandat 64.831 kb on + strandat 64.838 kb on + strandat 64.838 kb on + strandat 64.852 kb on + strandat 64.852 kb on + strandat 64.852 kb on + strandat 64.852 kb on + strandat 64.852 kb on + strandat 64.853 kb on - strandat 64.853 kb on - strandat 64.853 kb on - strandat 64.860 kb on + strandat 64.861 kb on - strandat 64.861 kb on - strandat 64.863 kb on - strandat 64.940 kb on + strandat 64.965 kb on + strandat 64.966 kb on - strandat 64.991 kb on + strandat 64.991 kb on + strandat 65.001 kb on - strandat 65.060 kb on + strandat 65.060 kb on + strandat 65.060 kb on + strandat 65.060 kb on + strandat 65.061 kb on - strandat 65.061 kb on - strandat 65.061 kb on - strandat 65.061 kb on - strandat 65.061 kb on - strandat 65.113 kb on + strandat 65.114 kb on - strandat 65.219 kb on + strandat 65.219 kb on + strandat 65.220 kb on - strandat 65.220 kb on - strandat 65.220 kb on - strandat 65.428 kb on + strand, within ABIE40_RS26725at 65.429 kb on - strand, within ABIE40_RS26725at 65.429 kb on - strand, within ABIE40_RS26725at 65.530 kb on + strand, within ABIE40_RS26725at 65.530 kb on + strand, within ABIE40_RS26725at 65.530 kb on + strand, within ABIE40_RS26725at 65.531 kb on - strand, within ABIE40_RS26725at 65.531 kb on - strand, within ABIE40_RS26725at 65.537 kb on + strand, within ABIE40_RS26725at 65.555 kb on + strand, within ABIE40_RS26725at 65.556 kb on - strand, within ABIE40_RS26725at 65.580 kb on + strand, within ABIE40_RS26725

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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63,479 + -0.9
63,479 + -1.7
63,480 - -0.3
63,509 - +0.0
63,509 - +0.4
63,510 + -0.8
63,510 + -0.7
63,511 - -0.0
63,518 - -0.8
63,518 - +0.5
63,518 - +0.6
63,579 + -1.2
63,579 + -1.4
63,580 - +0.3
63,580 - -1.0
63,580 - +0.5
63,586 - +0.0
63,610 - -0.7
63,635 - +1.5
63,724 + -0.6
63,741 + -0.2
63,762 - +0.8
63,762 - +0.0
63,975 + -0.1
63,976 - -0.5
63,997 + -1.1
63,997 + +0.2
64,083 + +0.1
64,336 + -1.7
64,337 - -0.1
64,337 - -1.3
64,383 - +0.0
64,407 + +0.0
64,408 - +1.3
64,491 + ABIE40_RS26720 0.22 +0.7
64,492 - ABIE40_RS26720 0.22 +0.6
64,634 + -1.2
64,660 + +0.9
64,660 + -0.7
64,660 + -1.6
64,660 + +0.1
64,661 - -2.5
64,661 - +0.6
64,664 + -0.4
64,664 + -1.1
64,664 + +1.3
64,664 + -0.5
64,665 - +0.2
64,665 - -1.0
64,665 - -0.3
64,737 + +1.5
64,737 + +1.8
64,741 + -0.9
64,741 + -0.3
64,741 + +0.6
64,741 + +0.6
64,746 + +0.0
64,746 + -0.4
64,746 + -0.7
64,747 - +0.6
64,831 + -0.7
64,838 + -1.3
64,838 + -1.0
64,852 + -1.3
64,852 + -0.5
64,852 + -0.1
64,852 + -0.4
64,852 + +0.5
64,853 - -0.5
64,853 - -1.0
64,853 - -1.4
64,860 + -1.3
64,861 - +0.7
64,861 - -0.2
64,863 - +0.4
64,940 + -0.6
64,965 + -1.8
64,966 - +0.1
64,991 + -2.0
64,991 + -1.0
65,001 - -0.7
65,060 + +0.9
65,060 + -0.7
65,060 + -0.6
65,060 + +0.6
65,061 - -0.1
65,061 - +0.9
65,061 - +1.7
65,061 - +0.6
65,061 - -0.3
65,113 + -1.0
65,114 - -0.8
65,219 + -0.1
65,219 + +0.5
65,220 - -1.3
65,220 - +0.1
65,220 - +0.0
65,428 + ABIE40_RS26725 0.21 -1.7
65,429 - ABIE40_RS26725 0.21 +0.9
65,429 - ABIE40_RS26725 0.21 +0.5
65,530 + ABIE40_RS26725 0.34 -0.8
65,530 + ABIE40_RS26725 0.34 -1.0
65,530 + ABIE40_RS26725 0.34 -0.5
65,531 - ABIE40_RS26725 0.34 -0.4
65,531 - ABIE40_RS26725 0.34 -0.0
65,537 + ABIE40_RS26725 0.35 -1.1
65,555 + ABIE40_RS26725 0.37 +1.3
65,556 - ABIE40_RS26725 0.37 -1.6
65,580 + ABIE40_RS26725 0.40 +0.8

Or see this region's nucleotide sequence