Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26225

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS26220 and ABIE40_RS26225 are separated by 26 nucleotidesABIE40_RS26225 and ABIE40_RS26230 are separated by 142 nucleotidesABIE40_RS26230 and ABIE40_RS26235 are separated by 6 nucleotides ABIE40_RS26220: ABIE40_RS26220 - LysR family transcriptional regulator, at 1,425,499 to 1,426,425 _RS26220 ABIE40_RS26225: ABIE40_RS26225 - BON domain-containing protein, at 1,426,452 to 1,426,706 _RS26225 ABIE40_RS26230: ABIE40_RS26230 - cytochrome b/b6 domain-containing protein, at 1,426,849 to 1,427,340 _RS26230 ABIE40_RS26235: ABIE40_RS26235 - hypothetical protein, at 1,427,347 to 1,427,841 _RS26235 Position (kb) 1426 1427Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1425.715 kb on + strand, within ABIE40_RS26220at 1425.715 kb on + strand, within ABIE40_RS26220at 1425.716 kb on - strand, within ABIE40_RS26220at 1425.754 kb on + strand, within ABIE40_RS26220at 1425.755 kb on - strand, within ABIE40_RS26220at 1425.810 kb on - strand, within ABIE40_RS26220at 1425.865 kb on + strand, within ABIE40_RS26220at 1425.866 kb on - strand, within ABIE40_RS26220at 1425.866 kb on - strand, within ABIE40_RS26220at 1425.900 kb on + strand, within ABIE40_RS26220at 1426.117 kb on + strand, within ABIE40_RS26220at 1426.117 kb on + strand, within ABIE40_RS26220at 1426.118 kb on - strand, within ABIE40_RS26220at 1426.137 kb on - strand, within ABIE40_RS26220at 1426.142 kb on - strand, within ABIE40_RS26220at 1426.316 kb on + strand, within ABIE40_RS26220at 1426.316 kb on + strand, within ABIE40_RS26220at 1426.316 kb on + strand, within ABIE40_RS26220at 1426.316 kb on + strand, within ABIE40_RS26220at 1426.316 kb on + strand, within ABIE40_RS26220at 1426.316 kb on + strand, within ABIE40_RS26220at 1426.317 kb on - strand, within ABIE40_RS26220at 1426.453 kb on + strandat 1426.487 kb on + strand, within ABIE40_RS26225at 1426.487 kb on + strand, within ABIE40_RS26225at 1426.488 kb on - strand, within ABIE40_RS26225at 1426.691 kb on + strandat 1426.691 kb on + strandat 1426.771 kb on - strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.864 kb on + strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.865 kb on - strandat 1426.962 kb on + strand, within ABIE40_RS26230at 1426.962 kb on + strand, within ABIE40_RS26230at 1426.963 kb on - strand, within ABIE40_RS26230at 1426.963 kb on - strand, within ABIE40_RS26230at 1426.963 kb on - strand, within ABIE40_RS26230at 1426.963 kb on - strand, within ABIE40_RS26230at 1427.017 kb on + strand, within ABIE40_RS26230at 1427.017 kb on + strand, within ABIE40_RS26230at 1427.017 kb on + strand, within ABIE40_RS26230at 1427.017 kb on + strand, within ABIE40_RS26230at 1427.017 kb on + strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.018 kb on - strand, within ABIE40_RS26230at 1427.019 kb on + strand, within ABIE40_RS26230at 1427.149 kb on + strand, within ABIE40_RS26230at 1427.149 kb on + strand, within ABIE40_RS26230at 1427.149 kb on + strand, within ABIE40_RS26230at 1427.149 kb on + strand, within ABIE40_RS26230at 1427.191 kb on + strand, within ABIE40_RS26230at 1427.192 kb on - strand, within ABIE40_RS26230at 1427.192 kb on - strand, within ABIE40_RS26230at 1427.194 kb on + strand, within ABIE40_RS26230at 1427.194 kb on + strand, within ABIE40_RS26230at 1427.194 kb on + strand, within ABIE40_RS26230at 1427.195 kb on - strand, within ABIE40_RS26230at 1427.195 kb on - strand, within ABIE40_RS26230at 1427.195 kb on - strand, within ABIE40_RS26230at 1427.195 kb on - strand, within ABIE40_RS26230at 1427.195 kb on - strand, within ABIE40_RS26230at 1427.195 kb on - strand, within ABIE40_RS26230at 1427.299 kb on + strandat 1427.300 kb on - strandat 1427.300 kb on - strandat 1427.413 kb on - strand, within ABIE40_RS26235at 1427.413 kb on - strand, within ABIE40_RS26235at 1427.413 kb on - strand, within ABIE40_RS26235at 1427.491 kb on + strand, within ABIE40_RS26235at 1427.491 kb on + strand, within ABIE40_RS26235

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,425,715 + ABIE40_RS26220 0.23 -0.3
1,425,715 + ABIE40_RS26220 0.23 -0.2
1,425,716 - ABIE40_RS26220 0.23 +0.3
1,425,754 + ABIE40_RS26220 0.28 -0.4
1,425,755 - ABIE40_RS26220 0.28 +0.1
1,425,810 - ABIE40_RS26220 0.34 -1.5
1,425,865 + ABIE40_RS26220 0.39 +0.2
1,425,866 - ABIE40_RS26220 0.40 +2.0
1,425,866 - ABIE40_RS26220 0.40 -2.0
1,425,900 + ABIE40_RS26220 0.43 -0.4
1,426,117 + ABIE40_RS26220 0.67 -0.3
1,426,117 + ABIE40_RS26220 0.67 -0.4
1,426,118 - ABIE40_RS26220 0.67 -0.8
1,426,137 - ABIE40_RS26220 0.69 -2.8
1,426,142 - ABIE40_RS26220 0.69 -1.7
1,426,316 + ABIE40_RS26220 0.88 -0.4
1,426,316 + ABIE40_RS26220 0.88 -0.2
1,426,316 + ABIE40_RS26220 0.88 +1.8
1,426,316 + ABIE40_RS26220 0.88 -0.6
1,426,316 + ABIE40_RS26220 0.88 +1.2
1,426,316 + ABIE40_RS26220 0.88 +3.7
1,426,317 - ABIE40_RS26220 0.88 -0.1
1,426,453 + -0.4
1,426,487 + ABIE40_RS26225 0.14 +1.4
1,426,487 + ABIE40_RS26225 0.14 +0.3
1,426,488 - ABIE40_RS26225 0.14 +0.5
1,426,691 + +1.2
1,426,691 + +1.1
1,426,771 - -0.8
1,426,864 + +0.4
1,426,864 + -0.3
1,426,864 + -1.0
1,426,864 + -0.1
1,426,864 + -0.2
1,426,864 + +0.7
1,426,864 + -0.7
1,426,865 - -0.1
1,426,865 - +1.6
1,426,865 - -1.0
1,426,865 - -0.0
1,426,865 - +0.6
1,426,865 - -0.7
1,426,962 + ABIE40_RS26230 0.23 -2.1
1,426,962 + ABIE40_RS26230 0.23 -0.7
1,426,963 - ABIE40_RS26230 0.23 -2.9
1,426,963 - ABIE40_RS26230 0.23 +0.3
1,426,963 - ABIE40_RS26230 0.23 -0.7
1,426,963 - ABIE40_RS26230 0.23 +0.3
1,427,017 + ABIE40_RS26230 0.34 +0.9
1,427,017 + ABIE40_RS26230 0.34 -3.5
1,427,017 + ABIE40_RS26230 0.34 -0.6
1,427,017 + ABIE40_RS26230 0.34 +0.6
1,427,017 + ABIE40_RS26230 0.34 -0.6
1,427,018 - ABIE40_RS26230 0.34 -0.1
1,427,018 - ABIE40_RS26230 0.34 +0.8
1,427,018 - ABIE40_RS26230 0.34 +0.1
1,427,018 - ABIE40_RS26230 0.34 -0.5
1,427,018 - ABIE40_RS26230 0.34 -0.0
1,427,018 - ABIE40_RS26230 0.34 +0.2
1,427,018 - ABIE40_RS26230 0.34 -0.5
1,427,019 + ABIE40_RS26230 0.35 +0.2
1,427,149 + ABIE40_RS26230 0.61 -0.7
1,427,149 + ABIE40_RS26230 0.61 +0.5
1,427,149 + ABIE40_RS26230 0.61 +1.2
1,427,149 + ABIE40_RS26230 0.61 +0.4
1,427,191 + ABIE40_RS26230 0.70 -1.2
1,427,192 - ABIE40_RS26230 0.70 -2.2
1,427,192 - ABIE40_RS26230 0.70 +0.5
1,427,194 + ABIE40_RS26230 0.70 -0.4
1,427,194 + ABIE40_RS26230 0.70 -0.7
1,427,194 + ABIE40_RS26230 0.70 +0.9
1,427,195 - ABIE40_RS26230 0.70 -0.4
1,427,195 - ABIE40_RS26230 0.70 +0.4
1,427,195 - ABIE40_RS26230 0.70 +0.8
1,427,195 - ABIE40_RS26230 0.70 +0.6
1,427,195 - ABIE40_RS26230 0.70 +0.7
1,427,195 - ABIE40_RS26230 0.70 +2.1
1,427,299 + +0.3
1,427,300 - -0.0
1,427,300 - -0.3
1,427,413 - ABIE40_RS26235 0.13 +0.5
1,427,413 - ABIE40_RS26235 0.13 +0.3
1,427,413 - ABIE40_RS26235 0.13 +0.1
1,427,491 + ABIE40_RS26235 0.29 -0.1
1,427,491 + ABIE40_RS26235 0.29 -0.6

Or see this region's nucleotide sequence