Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23785 and ABIE40_RS23790 are separated by 30 nucleotides ABIE40_RS23790 and ABIE40_RS23795 are separated by 20 nucleotides ABIE40_RS23795 and ABIE40_RS23800 are separated by 69 nucleotides
ABIE40_RS23785: ABIE40_RS23785 - AI-2E family transporter, at 899,321 to 900,469
_RS23785
ABIE40_RS23790: ABIE40_RS23790 - polyphosphate kinase 2, at 900,500 to 901,342
_RS23790
ABIE40_RS23795: ABIE40_RS23795 - SulP family inorganic anion transporter, at 901,363 to 903,081
_RS23795
ABIE40_RS23800: ABIE40_RS23800 - HlyD family secretion protein, at 903,151 to 904,308
_RS23800
Position (kb) 901
902
903
904 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 900.501 kb on + strand at 900.502 kb on - strand at 900.512 kb on - strand at 900.628 kb on + strand, within ABIE40_RS23790 at 900.628 kb on + strand, within ABIE40_RS23790 at 900.726 kb on + strand, within ABIE40_RS23790 at 900.727 kb on - strand, within ABIE40_RS23790 at 900.738 kb on + strand, within ABIE40_RS23790 at 900.757 kb on - strand, within ABIE40_RS23790 at 900.859 kb on - strand, within ABIE40_RS23790 at 900.981 kb on + strand, within ABIE40_RS23790 at 900.981 kb on + strand, within ABIE40_RS23790 at 900.981 kb on + strand, within ABIE40_RS23790 at 900.982 kb on - strand, within ABIE40_RS23790 at 900.982 kb on - strand, within ABIE40_RS23790 at 900.982 kb on - strand, within ABIE40_RS23790 at 901.035 kb on + strand, within ABIE40_RS23790 at 901.035 kb on + strand, within ABIE40_RS23790 at 901.035 kb on + strand, within ABIE40_RS23790 at 901.036 kb on - strand, within ABIE40_RS23790 at 901.036 kb on - strand, within ABIE40_RS23790 at 901.036 kb on - strand, within ABIE40_RS23790 at 901.047 kb on + strand, within ABIE40_RS23790 at 901.047 kb on + strand, within ABIE40_RS23790 at 901.047 kb on + strand, within ABIE40_RS23790 at 901.048 kb on - strand, within ABIE40_RS23790 at 901.048 kb on - strand, within ABIE40_RS23790 at 901.048 kb on - strand, within ABIE40_RS23790 at 901.048 kb on - strand, within ABIE40_RS23790 at 901.048 kb on - strand, within ABIE40_RS23790 at 901.048 kb on - strand, within ABIE40_RS23790 at 901.133 kb on + strand, within ABIE40_RS23790 at 901.258 kb on - strand at 901.329 kb on + strand at 901.329 kb on + strand at 901.329 kb on + strand at 901.329 kb on + strand at 901.329 kb on + strand at 901.330 kb on - strand at 901.330 kb on - strand at 901.330 kb on - strand at 901.330 kb on - strand at 901.330 kb on - strand at 901.330 kb on - strand at 901.330 kb on - strand at 901.364 kb on + strand at 901.365 kb on - strand at 901.374 kb on + strand at 901.375 kb on - strand at 901.685 kb on + strand, within ABIE40_RS23795 at 901.685 kb on + strand, within ABIE40_RS23795 at 901.686 kb on - strand, within ABIE40_RS23795 at 901.686 kb on - strand, within ABIE40_RS23795 at 901.686 kb on - strand, within ABIE40_RS23795 at 901.686 kb on - strand, within ABIE40_RS23795 at 901.686 kb on - strand, within ABIE40_RS23795 at 901.686 kb on - strand, within ABIE40_RS23795 at 901.707 kb on + strand, within ABIE40_RS23795 at 901.844 kb on + strand, within ABIE40_RS23795 at 901.844 kb on + strand, within ABIE40_RS23795 at 901.845 kb on - strand, within ABIE40_RS23795 at 901.975 kb on - strand, within ABIE40_RS23795 at 902.187 kb on + strand, within ABIE40_RS23795 at 902.334 kb on + strand, within ABIE40_RS23795 at 902.334 kb on + strand, within ABIE40_RS23795 at 902.334 kb on + strand, within ABIE40_RS23795 at 902.334 kb on + strand, within ABIE40_RS23795 at 902.334 kb on + strand, within ABIE40_RS23795 at 902.335 kb on - strand, within ABIE40_RS23795 at 902.335 kb on - strand, within ABIE40_RS23795 at 902.898 kb on - strand, within ABIE40_RS23795 at 902.898 kb on - strand, within ABIE40_RS23795 at 902.898 kb on - strand, within ABIE40_RS23795 at 902.924 kb on + strand at 902.924 kb on + strand at 902.924 kb on + strand at 902.924 kb on + strand at 902.924 kb on + strand at 902.924 kb on + strand at 902.925 kb on - strand at 902.925 kb on - strand at 902.925 kb on - strand at 902.925 kb on - strand at 903.015 kb on + strand at 903.067 kb on + strand at 903.068 kb on - strand at 903.077 kb on - strand at 903.092 kb on + strand at 903.093 kb on - strand at 903.093 kb on - strand at 903.170 kb on + strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.171 kb on - strand at 903.231 kb on - strand at 903.271 kb on + strand, within ABIE40_RS23800 at 903.272 kb on - strand, within ABIE40_RS23800 at 903.279 kb on - strand, within ABIE40_RS23800 at 903.279 kb on - strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.608 kb on + strand, within ABIE40_RS23800 at 903.609 kb on - strand, within ABIE40_RS23800 at 903.609 kb on - strand, within ABIE40_RS23800 at 903.609 kb on - strand, within ABIE40_RS23800 at 903.609 kb on - strand, within ABIE40_RS23800 at 903.609 kb on - strand, within ABIE40_RS23800 at 903.609 kb on - strand, within ABIE40_RS23800 at 903.651 kb on - strand, within ABIE40_RS23800 at 903.719 kb on + strand, within ABIE40_RS23800 at 903.782 kb on + strand, within ABIE40_RS23800 at 903.782 kb on + strand, within ABIE40_RS23800 at 903.783 kb on - strand, within ABIE40_RS23800 at 903.783 kb on - strand, within ABIE40_RS23800 at 903.783 kb on - strand, within ABIE40_RS23800 at 903.819 kb on - strand, within ABIE40_RS23800 at 904.013 kb on + strand, within ABIE40_RS23800 at 904.061 kb on - strand, within ABIE40_RS23800 at 904.061 kb on - strand, within ABIE40_RS23800
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 900,501 + +0.0 900,502 - +0.2 900,512 - -0.5 900,628 + ABIE40_RS23790 0.15 -0.3 900,628 + ABIE40_RS23790 0.15 -0.5 900,726 + ABIE40_RS23790 0.27 +0.3 900,727 - ABIE40_RS23790 0.27 +0.1 900,738 + ABIE40_RS23790 0.28 -1.1 900,757 - ABIE40_RS23790 0.30 -0.7 900,859 - ABIE40_RS23790 0.43 -0.2 900,981 + ABIE40_RS23790 0.57 -0.7 900,981 + ABIE40_RS23790 0.57 +0.5 900,981 + ABIE40_RS23790 0.57 -0.4 900,982 - ABIE40_RS23790 0.57 -0.3 900,982 - ABIE40_RS23790 0.57 -0.4 900,982 - ABIE40_RS23790 0.57 +0.6 901,035 + ABIE40_RS23790 0.63 +2.1 901,035 + ABIE40_RS23790 0.63 +0.2 901,035 + ABIE40_RS23790 0.63 +0.1 901,036 - ABIE40_RS23790 0.64 -0.0 901,036 - ABIE40_RS23790 0.64 +1.8 901,036 - ABIE40_RS23790 0.64 -0.8 901,047 + ABIE40_RS23790 0.65 -0.9 901,047 + ABIE40_RS23790 0.65 +1.1 901,047 + ABIE40_RS23790 0.65 -2.1 901,048 - ABIE40_RS23790 0.65 -0.1 901,048 - ABIE40_RS23790 0.65 -0.6 901,048 - ABIE40_RS23790 0.65 -1.5 901,048 - ABIE40_RS23790 0.65 -1.0 901,048 - ABIE40_RS23790 0.65 -2.0 901,048 - ABIE40_RS23790 0.65 -1.7 901,133 + ABIE40_RS23790 0.75 -0.9 901,258 - -1.2 901,329 + +2.8 901,329 + +0.4 901,329 + -0.0 901,329 + +0.4 901,329 + -2.7 901,330 - -3.8 901,330 - -1.1 901,330 - +0.8 901,330 - +1.6 901,330 - -0.1 901,330 - -1.8 901,330 - +1.9 901,364 + -0.4 901,365 - -1.1 901,374 + -0.6 901,375 - +0.7 901,685 + ABIE40_RS23795 0.19 -0.7 901,685 + ABIE40_RS23795 0.19 -0.4 901,686 - ABIE40_RS23795 0.19 -1.2 901,686 - ABIE40_RS23795 0.19 +0.9 901,686 - ABIE40_RS23795 0.19 -0.1 901,686 - ABIE40_RS23795 0.19 -1.0 901,686 - ABIE40_RS23795 0.19 -1.0 901,686 - ABIE40_RS23795 0.19 -0.7 901,707 + ABIE40_RS23795 0.20 -1.1 901,844 + ABIE40_RS23795 0.28 -1.7 901,844 + ABIE40_RS23795 0.28 +0.1 901,845 - ABIE40_RS23795 0.28 +0.3 901,975 - ABIE40_RS23795 0.36 -0.0 902,187 + ABIE40_RS23795 0.48 +0.6 902,334 + ABIE40_RS23795 0.56 +0.0 902,334 + ABIE40_RS23795 0.56 -0.1 902,334 + ABIE40_RS23795 0.56 +1.4 902,334 + ABIE40_RS23795 0.56 +0.4 902,334 + ABIE40_RS23795 0.56 -0.9 902,335 - ABIE40_RS23795 0.57 +0.0 902,335 - ABIE40_RS23795 0.57 +0.7 902,898 - ABIE40_RS23795 0.89 -1.2 902,898 - ABIE40_RS23795 0.89 +0.5 902,898 - ABIE40_RS23795 0.89 +0.5 902,924 + +0.3 902,924 + -0.8 902,924 + +0.2 902,924 + +0.4 902,924 + +0.5 902,924 + -1.9 902,925 - -0.2 902,925 - +0.2 902,925 - -0.5 902,925 - -1.7 903,015 + +0.7 903,067 + -0.7 903,068 - +0.9 903,077 - +0.6 903,092 + +1.4 903,093 - +0.0 903,093 - -1.3 903,170 + +0.3 903,171 - +0.7 903,171 - +1.4 903,171 - -1.5 903,171 - -0.1 903,171 - -1.5 903,171 - +0.9 903,171 - +0.2 903,171 - -1.5 903,231 - -0.5 903,271 + ABIE40_RS23800 0.10 +0.3 903,272 - ABIE40_RS23800 0.10 -0.5 903,279 - ABIE40_RS23800 0.11 -0.0 903,279 - ABIE40_RS23800 0.11 +0.4 903,608 + ABIE40_RS23800 0.39 -0.9 903,608 + ABIE40_RS23800 0.39 -0.3 903,608 + ABIE40_RS23800 0.39 -1.5 903,608 + ABIE40_RS23800 0.39 -0.2 903,608 + ABIE40_RS23800 0.39 -0.7 903,608 + ABIE40_RS23800 0.39 -0.9 903,608 + ABIE40_RS23800 0.39 -0.7 903,609 - ABIE40_RS23800 0.40 +0.5 903,609 - ABIE40_RS23800 0.40 -0.3 903,609 - ABIE40_RS23800 0.40 +0.2 903,609 - ABIE40_RS23800 0.40 -0.4 903,609 - ABIE40_RS23800 0.40 -1.0 903,609 - ABIE40_RS23800 0.40 +1.7 903,651 - ABIE40_RS23800 0.43 +0.4 903,719 + ABIE40_RS23800 0.49 -0.4 903,782 + ABIE40_RS23800 0.54 -0.4 903,782 + ABIE40_RS23800 0.54 -1.3 903,783 - ABIE40_RS23800 0.55 +0.8 903,783 - ABIE40_RS23800 0.55 -0.8 903,783 - ABIE40_RS23800 0.55 -0.1 903,819 - ABIE40_RS23800 0.58 +0.5 904,013 + ABIE40_RS23800 0.74 -0.9 904,061 - ABIE40_RS23800 0.79 -1.0 904,061 - ABIE40_RS23800 0.79 +0.8
Or see this region's nucleotide sequence