Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23605 and ABIE40_RS23610 overlap by 4 nucleotides ABIE40_RS23610 and ABIE40_RS23615 overlap by 4 nucleotides ABIE40_RS23615 and ABIE40_RS23620 are separated by 83 nucleotides ABIE40_RS23620 and ABIE40_RS23625 are separated by 172 nucleotides ABIE40_RS23625 and ABIE40_RS23630 are separated by 111 nucleotides
ABIE40_RS23605: ABIE40_RS23605 - hypothetical protein, at 868,138 to 868,602
_RS23605
ABIE40_RS23610: ABIE40_RS23610 - response regulator transcription factor, at 868,599 to 869,222
_RS23610
ABIE40_RS23615: ABIE40_RS23615 - sensor histidine kinase, at 869,219 to 870,613
_RS23615
ABIE40_RS23620: ABIE40_RS23620 - hypothetical protein, at 870,697 to 870,876
_RS23620
ABIE40_RS23625: ABIE40_RS23625 - DUF1236 domain-containing protein, at 871,049 to 871,447
_RS23625
ABIE40_RS23630: ABIE40_RS23630 - DUF1236 domain-containing protein, at 871,559 to 872,326
_RS23630
Position (kb) 869
870
871 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 868.314 kb on - strand, within ABIE40_RS23605 at 868.513 kb on + strand, within ABIE40_RS23605 at 868.513 kb on + strand, within ABIE40_RS23605 at 868.514 kb on - strand, within ABIE40_RS23605 at 868.576 kb on - strand at 868.591 kb on + strand at 868.592 kb on - strand at 868.718 kb on + strand, within ABIE40_RS23610 at 868.718 kb on + strand, within ABIE40_RS23610 at 868.719 kb on - strand, within ABIE40_RS23610 at 868.750 kb on + strand, within ABIE40_RS23610 at 868.918 kb on + strand, within ABIE40_RS23610 at 868.918 kb on + strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.919 kb on - strand, within ABIE40_RS23610 at 868.955 kb on + strand, within ABIE40_RS23610 at 868.955 kb on + strand, within ABIE40_RS23610 at 868.955 kb on + strand, within ABIE40_RS23610 at 868.956 kb on - strand, within ABIE40_RS23610 at 868.956 kb on - strand, within ABIE40_RS23610 at 868.983 kb on + strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 868.984 kb on - strand, within ABIE40_RS23610 at 869.291 kb on - strand at 869.463 kb on + strand, within ABIE40_RS23615 at 869.496 kb on + strand, within ABIE40_RS23615 at 869.660 kb on - strand, within ABIE40_RS23615 at 869.778 kb on + strand, within ABIE40_RS23615 at 869.778 kb on + strand, within ABIE40_RS23615 at 869.778 kb on + strand, within ABIE40_RS23615 at 869.778 kb on + strand, within ABIE40_RS23615 at 869.779 kb on - strand, within ABIE40_RS23615 at 869.785 kb on + strand, within ABIE40_RS23615 at 869.832 kb on + strand, within ABIE40_RS23615 at 869.833 kb on - strand, within ABIE40_RS23615 at 870.087 kb on + strand, within ABIE40_RS23615 at 870.141 kb on + strand, within ABIE40_RS23615 at 870.141 kb on + strand, within ABIE40_RS23615 at 870.142 kb on - strand, within ABIE40_RS23615 at 870.142 kb on - strand, within ABIE40_RS23615 at 870.294 kb on + strand, within ABIE40_RS23615 at 870.295 kb on - strand, within ABIE40_RS23615 at 870.295 kb on - strand, within ABIE40_RS23615 at 870.453 kb on + strand, within ABIE40_RS23615 at 870.453 kb on + strand, within ABIE40_RS23615 at 870.454 kb on - strand, within ABIE40_RS23615 at 870.454 kb on - strand, within ABIE40_RS23615 at 870.478 kb on + strand at 870.478 kb on + strand at 870.478 kb on + strand at 870.478 kb on + strand at 870.561 kb on - strand at 870.561 kb on - strand at 870.649 kb on + strand at 870.649 kb on + strand at 870.650 kb on - strand at 870.650 kb on - strand at 870.650 kb on - strand at 870.650 kb on - strand at 870.652 kb on + strand at 870.652 kb on + strand at 870.657 kb on + strand at 870.673 kb on - strand at 870.698 kb on + strand at 870.718 kb on - strand, within ABIE40_RS23620 at 870.788 kb on + strand, within ABIE40_RS23620 at 870.789 kb on - strand, within ABIE40_RS23620 at 870.789 kb on - strand, within ABIE40_RS23620 at 870.861 kb on + strand at 870.861 kb on + strand at 870.861 kb on + strand at 870.862 kb on - strand at 870.862 kb on - strand at 870.862 kb on - strand at 870.899 kb on + strand at 871.004 kb on + strand at 871.019 kb on - strand at 871.063 kb on + strand at 871.063 kb on + strand at 871.063 kb on + strand at 871.063 kb on + strand at 871.064 kb on - strand at 871.068 kb on + strand at 871.068 kb on + strand at 871.069 kb on - strand at 871.069 kb on - strand at 871.069 kb on - strand at 871.256 kb on + strand, within ABIE40_RS23625 at 871.257 kb on - strand, within ABIE40_RS23625 at 871.257 kb on - strand, within ABIE40_RS23625 at 871.257 kb on - strand, within ABIE40_RS23625 at 871.257 kb on - strand, within ABIE40_RS23625 at 871.257 kb on - strand, within ABIE40_RS23625 at 871.257 kb on - strand, within ABIE40_RS23625 at 871.370 kb on + strand, within ABIE40_RS23625 at 871.370 kb on + strand, within ABIE40_RS23625 at 871.371 kb on - strand, within ABIE40_RS23625 at 871.371 kb on - strand, within ABIE40_RS23625 at 871.608 kb on + strand at 871.608 kb on + strand at 871.608 kb on + strand at 871.609 kb on - strand at 871.609 kb on - strand at 871.609 kb on - strand at 871.609 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 868,314 - ABIE40_RS23605 0.38 +0.6 868,513 + ABIE40_RS23605 0.81 -0.8 868,513 + ABIE40_RS23605 0.81 +0.2 868,514 - ABIE40_RS23605 0.81 -0.2 868,576 - +0.2 868,591 + -2.1 868,592 - +0.0 868,718 + ABIE40_RS23610 0.19 +2.4 868,718 + ABIE40_RS23610 0.19 -1.0 868,719 - ABIE40_RS23610 0.19 -0.6 868,750 + ABIE40_RS23610 0.24 -0.1 868,918 + ABIE40_RS23610 0.51 -0.7 868,918 + ABIE40_RS23610 0.51 -0.3 868,919 - ABIE40_RS23610 0.51 +2.0 868,919 - ABIE40_RS23610 0.51 +0.9 868,919 - ABIE40_RS23610 0.51 -1.9 868,919 - ABIE40_RS23610 0.51 +0.7 868,919 - ABIE40_RS23610 0.51 -2.3 868,919 - ABIE40_RS23610 0.51 +0.7 868,919 - ABIE40_RS23610 0.51 -0.3 868,955 + ABIE40_RS23610 0.57 -0.8 868,955 + ABIE40_RS23610 0.57 -2.3 868,955 + ABIE40_RS23610 0.57 -1.0 868,956 - ABIE40_RS23610 0.57 +1.6 868,956 - ABIE40_RS23610 0.57 -0.3 868,983 + ABIE40_RS23610 0.62 -2.2 868,984 - ABIE40_RS23610 0.62 -1.1 868,984 - ABIE40_RS23610 0.62 -1.0 868,984 - ABIE40_RS23610 0.62 +2.0 868,984 - ABIE40_RS23610 0.62 +0.8 868,984 - ABIE40_RS23610 0.62 -1.3 868,984 - ABIE40_RS23610 0.62 -0.7 868,984 - ABIE40_RS23610 0.62 -0.5 869,291 - -0.3 869,463 + ABIE40_RS23615 0.17 +0.7 869,496 + ABIE40_RS23615 0.20 -1.3 869,660 - ABIE40_RS23615 0.32 +1.3 869,778 + ABIE40_RS23615 0.40 -0.5 869,778 + ABIE40_RS23615 0.40 +0.4 869,778 + ABIE40_RS23615 0.40 +2.5 869,778 + ABIE40_RS23615 0.40 +0.1 869,779 - ABIE40_RS23615 0.40 -0.2 869,785 + ABIE40_RS23615 0.41 -0.0 869,832 + ABIE40_RS23615 0.44 -0.4 869,833 - ABIE40_RS23615 0.44 +0.9 870,087 + ABIE40_RS23615 0.62 +1.0 870,141 + ABIE40_RS23615 0.66 -0.4 870,141 + ABIE40_RS23615 0.66 -2.2 870,142 - ABIE40_RS23615 0.66 +0.8 870,142 - ABIE40_RS23615 0.66 -1.0 870,294 + ABIE40_RS23615 0.77 +0.9 870,295 - ABIE40_RS23615 0.77 +0.8 870,295 - ABIE40_RS23615 0.77 +0.3 870,453 + ABIE40_RS23615 0.88 -2.9 870,453 + ABIE40_RS23615 0.88 +0.4 870,454 - ABIE40_RS23615 0.89 -1.5 870,454 - ABIE40_RS23615 0.89 +0.6 870,478 + +1.6 870,478 + +0.6 870,478 + -0.8 870,478 + +0.3 870,561 - -0.5 870,561 - +0.6 870,649 + -1.0 870,649 + +0.9 870,650 - -0.0 870,650 - -1.5 870,650 - +0.2 870,650 - -0.3 870,652 + -2.1 870,652 + -0.4 870,657 + -0.1 870,673 - -0.3 870,698 + -0.8 870,718 - ABIE40_RS23620 0.12 -1.1 870,788 + ABIE40_RS23620 0.51 +0.0 870,789 - ABIE40_RS23620 0.51 +0.0 870,789 - ABIE40_RS23620 0.51 -0.1 870,861 + +1.0 870,861 + -0.3 870,861 + -0.3 870,862 - +1.0 870,862 - -2.9 870,862 - +0.2 870,899 + +0.5 871,004 + +1.5 871,019 - -0.1 871,063 + +0.4 871,063 + +0.6 871,063 + +0.5 871,063 + -1.0 871,064 - -1.5 871,068 + -0.6 871,068 + -2.0 871,069 - -0.3 871,069 - -2.4 871,069 - -0.7 871,256 + ABIE40_RS23625 0.52 +0.1 871,257 - ABIE40_RS23625 0.52 +0.1 871,257 - ABIE40_RS23625 0.52 -0.7 871,257 - ABIE40_RS23625 0.52 +0.8 871,257 - ABIE40_RS23625 0.52 +0.2 871,257 - ABIE40_RS23625 0.52 -0.2 871,257 - ABIE40_RS23625 0.52 -0.8 871,370 + ABIE40_RS23625 0.80 -0.8 871,370 + ABIE40_RS23625 0.80 +1.6 871,371 - ABIE40_RS23625 0.81 -0.1 871,371 - ABIE40_RS23625 0.81 +2.0 871,608 + +1.0 871,608 + +0.6 871,608 + -0.1 871,609 - -3.0 871,609 - +0.6 871,609 - -0.3 871,609 - +0.5
Or see this region's nucleotide sequence