Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS23015

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS23010 and ABIE40_RS23015 are separated by 5 nucleotidesABIE40_RS23015 and ABIE40_RS23020 are separated by 9 nucleotides ABIE40_RS23010: ABIE40_RS23010 - alpha/beta fold hydrolase, at 748,764 to 749,642 _RS23010 ABIE40_RS23015: ABIE40_RS23015 - IclR family transcriptional regulator, at 749,648 to 750,496 _RS23015 ABIE40_RS23020: ABIE40_RS23020 - DUF1217 domain-containing protein, at 750,506 to 752,689 _RS23020 Position (kb) 749 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 748.654 kb on - strandat 748.679 kb on + strandat 748.680 kb on - strandat 748.681 kb on + strandat 748.682 kb on - strandat 748.729 kb on - strandat 748.794 kb on + strandat 748.795 kb on - strandat 748.795 kb on - strandat 748.795 kb on - strandat 748.918 kb on - strand, within ABIE40_RS23010at 749.022 kb on + strand, within ABIE40_RS23010at 749.154 kb on + strand, within ABIE40_RS23010at 749.154 kb on + strand, within ABIE40_RS23010at 749.155 kb on - strand, within ABIE40_RS23010at 749.155 kb on - strand, within ABIE40_RS23010at 749.155 kb on - strand, within ABIE40_RS23010at 749.155 kb on - strand, within ABIE40_RS23010at 749.157 kb on + strand, within ABIE40_RS23010at 749.157 kb on + strand, within ABIE40_RS23010at 749.158 kb on - strand, within ABIE40_RS23010at 749.158 kb on - strand, within ABIE40_RS23010at 749.349 kb on + strand, within ABIE40_RS23010at 749.350 kb on - strand, within ABIE40_RS23010at 749.350 kb on - strand, within ABIE40_RS23010at 749.366 kb on + strand, within ABIE40_RS23010at 749.367 kb on - strand, within ABIE40_RS23010at 749.388 kb on + strand, within ABIE40_RS23010at 749.388 kb on + strand, within ABIE40_RS23010at 749.389 kb on - strand, within ABIE40_RS23010at 749.389 kb on - strand, within ABIE40_RS23010at 749.443 kb on - strand, within ABIE40_RS23010at 749.581 kb on + strandat 749.585 kb on - strandat 749.597 kb on - strandat 749.597 kb on - strandat 749.597 kb on - strandat 749.597 kb on - strandat 749.617 kb on + strandat 749.617 kb on + strandat 749.647 kb on + strandat 749.927 kb on - strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.020 kb on + strand, within ABIE40_RS23015at 750.021 kb on - strand, within ABIE40_RS23015at 750.021 kb on - strand, within ABIE40_RS23015at 750.021 kb on - strand, within ABIE40_RS23015at 750.021 kb on - strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.032 kb on + strand, within ABIE40_RS23015at 750.089 kb on + strand, within ABIE40_RS23015at 750.089 kb on + strand, within ABIE40_RS23015at 750.090 kb on - strand, within ABIE40_RS23015at 750.090 kb on - strand, within ABIE40_RS23015at 750.090 kb on - strand, within ABIE40_RS23015at 750.187 kb on + strand, within ABIE40_RS23015at 750.188 kb on - strand, within ABIE40_RS23015at 750.188 kb on - strand, within ABIE40_RS23015at 750.188 kb on - strand, within ABIE40_RS23015at 750.232 kb on - strand, within ABIE40_RS23015at 750.481 kb on + strandat 750.481 kb on + strandat 750.541 kb on + strandat 750.572 kb on + strandat 750.572 kb on + strandat 750.572 kb on + strandat 750.572 kb on + strandat 750.573 kb on - strandat 750.573 kb on - strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.618 kb on + strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.619 kb on - strandat 750.629 kb on - strandat 750.629 kb on - strandat 750.735 kb on + strand, within ABIE40_RS23020at 750.735 kb on + strand, within ABIE40_RS23020at 750.735 kb on + strand, within ABIE40_RS23020at 750.736 kb on - strand, within ABIE40_RS23020at 750.798 kb on + strand, within ABIE40_RS23020at 750.798 kb on + strand, within ABIE40_RS23020at 750.799 kb on - strand, within ABIE40_RS23020at 750.799 kb on - strand, within ABIE40_RS23020at 750.799 kb on - strand, within ABIE40_RS23020at 750.835 kb on - strand, within ABIE40_RS23020at 750.857 kb on - strand, within ABIE40_RS23020at 750.897 kb on + strand, within ABIE40_RS23020at 750.897 kb on + strand, within ABIE40_RS23020at 750.898 kb on - strand, within ABIE40_RS23020at 750.898 kb on - strand, within ABIE40_RS23020at 751.033 kb on - strand, within ABIE40_RS23020at 751.194 kb on + strand, within ABIE40_RS23020at 751.195 kb on - strand, within ABIE40_RS23020at 751.251 kb on + strand, within ABIE40_RS23020at 751.272 kb on + strand, within ABIE40_RS23020at 751.272 kb on + strand, within ABIE40_RS23020at 751.273 kb on - strand, within ABIE40_RS23020at 751.273 kb on - strand, within ABIE40_RS23020at 751.273 kb on - strand, within ABIE40_RS23020at 751.275 kb on + strand, within ABIE40_RS23020at 751.275 kb on + strand, within ABIE40_RS23020at 751.275 kb on + strand, within ABIE40_RS23020at 751.275 kb on + strand, within ABIE40_RS23020at 751.276 kb on - strand, within ABIE40_RS23020at 751.276 kb on - strand, within ABIE40_RS23020at 751.276 kb on - strand, within ABIE40_RS23020at 751.276 kb on - strand, within ABIE40_RS23020at 751.276 kb on - strand, within ABIE40_RS23020at 751.276 kb on - strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.401 kb on + strand, within ABIE40_RS23020at 751.402 kb on - strand, within ABIE40_RS23020at 751.402 kb on - strand, within ABIE40_RS23020at 751.402 kb on - strand, within ABIE40_RS23020at 751.402 kb on - strand, within ABIE40_RS23020at 751.402 kb on - strand, within ABIE40_RS23020at 751.402 kb on - strand, within ABIE40_RS23020

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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748,654 - -0.0
748,679 + +0.8
748,680 - +0.3
748,681 + +0.6
748,682 - +1.2
748,729 - +0.2
748,794 + +1.0
748,795 - +1.3
748,795 - +2.0
748,795 - +0.8
748,918 - ABIE40_RS23010 0.18 +1.3
749,022 + ABIE40_RS23010 0.29 -0.4
749,154 + ABIE40_RS23010 0.44 +1.4
749,154 + ABIE40_RS23010 0.44 -0.6
749,155 - ABIE40_RS23010 0.44 -1.4
749,155 - ABIE40_RS23010 0.44 -0.4
749,155 - ABIE40_RS23010 0.44 -0.2
749,155 - ABIE40_RS23010 0.44 +0.3
749,157 + ABIE40_RS23010 0.45 +0.5
749,157 + ABIE40_RS23010 0.45 +0.8
749,158 - ABIE40_RS23010 0.45 +1.0
749,158 - ABIE40_RS23010 0.45 +0.6
749,349 + ABIE40_RS23010 0.67 -0.6
749,350 - ABIE40_RS23010 0.67 +0.4
749,350 - ABIE40_RS23010 0.67 +1.0
749,366 + ABIE40_RS23010 0.68 -0.1
749,367 - ABIE40_RS23010 0.69 -0.2
749,388 + ABIE40_RS23010 0.71 +1.2
749,388 + ABIE40_RS23010 0.71 +0.3
749,389 - ABIE40_RS23010 0.71 +1.7
749,389 - ABIE40_RS23010 0.71 -1.2
749,443 - ABIE40_RS23010 0.77 -0.4
749,581 + -1.8
749,585 - +1.8
749,597 - -2.0
749,597 - -0.4
749,597 - -1.7
749,597 - -2.1
749,617 + -1.4
749,617 + +1.0
749,647 + -0.6
749,927 - ABIE40_RS23015 0.33 +1.8
750,020 + ABIE40_RS23015 0.44 +0.7
750,020 + ABIE40_RS23015 0.44 +0.4
750,020 + ABIE40_RS23015 0.44 -2.6
750,020 + ABIE40_RS23015 0.44 +0.7
750,020 + ABIE40_RS23015 0.44 +0.9
750,020 + ABIE40_RS23015 0.44 +0.6
750,020 + ABIE40_RS23015 0.44 +0.4
750,020 + ABIE40_RS23015 0.44 +0.3
750,020 + ABIE40_RS23015 0.44 +1.5
750,020 + ABIE40_RS23015 0.44 +0.4
750,021 - ABIE40_RS23015 0.44 -1.7
750,021 - ABIE40_RS23015 0.44 +0.9
750,021 - ABIE40_RS23015 0.44 +0.1
750,021 - ABIE40_RS23015 0.44 +1.4
750,032 + ABIE40_RS23015 0.45 +1.2
750,032 + ABIE40_RS23015 0.45 -0.0
750,032 + ABIE40_RS23015 0.45 +1.9
750,032 + ABIE40_RS23015 0.45 -0.2
750,032 + ABIE40_RS23015 0.45 +0.2
750,032 + ABIE40_RS23015 0.45 +1.0
750,032 + ABIE40_RS23015 0.45 +2.8
750,032 + ABIE40_RS23015 0.45 +0.5
750,089 + ABIE40_RS23015 0.52 -1.5
750,089 + ABIE40_RS23015 0.52 +0.8
750,090 - ABIE40_RS23015 0.52 +1.0
750,090 - ABIE40_RS23015 0.52 -0.6
750,090 - ABIE40_RS23015 0.52 -1.5
750,187 + ABIE40_RS23015 0.63 +1.7
750,188 - ABIE40_RS23015 0.64 +1.0
750,188 - ABIE40_RS23015 0.64 -0.5
750,188 - ABIE40_RS23015 0.64 -0.2
750,232 - ABIE40_RS23015 0.69 +0.4
750,481 + +1.1
750,481 + -0.0
750,541 + +0.0
750,572 + -1.1
750,572 + -1.0
750,572 + -0.4
750,572 + +0.5
750,573 - -1.0
750,573 - -1.6
750,618 + +0.1
750,618 + +1.3
750,618 + -0.0
750,618 + -1.2
750,618 + +0.1
750,618 + -0.0
750,618 + +0.3
750,619 - +0.2
750,619 - +0.1
750,619 - +3.5
750,619 - -0.6
750,619 - +0.7
750,629 - -0.4
750,629 - +0.3
750,735 + ABIE40_RS23020 0.10 +0.4
750,735 + ABIE40_RS23020 0.10 -0.8
750,735 + ABIE40_RS23020 0.10 +0.4
750,736 - ABIE40_RS23020 0.11 +2.0
750,798 + ABIE40_RS23020 0.13 +0.6
750,798 + ABIE40_RS23020 0.13 +1.1
750,799 - ABIE40_RS23020 0.13 -0.5
750,799 - ABIE40_RS23020 0.13 -0.0
750,799 - ABIE40_RS23020 0.13 -1.1
750,835 - ABIE40_RS23020 0.15 +1.7
750,857 - ABIE40_RS23020 0.16 +1.1
750,897 + ABIE40_RS23020 0.18 -0.4
750,897 + ABIE40_RS23020 0.18 -0.3
750,898 - ABIE40_RS23020 0.18 -1.4
750,898 - ABIE40_RS23020 0.18 +1.1
751,033 - ABIE40_RS23020 0.24 -0.2
751,194 + ABIE40_RS23020 0.32 -0.6
751,195 - ABIE40_RS23020 0.32 +2.3
751,251 + ABIE40_RS23020 0.34 +0.0
751,272 + ABIE40_RS23020 0.35 +1.0
751,272 + ABIE40_RS23020 0.35 +0.0
751,273 - ABIE40_RS23020 0.35 +0.1
751,273 - ABIE40_RS23020 0.35 +0.6
751,273 - ABIE40_RS23020 0.35 +1.4
751,275 + ABIE40_RS23020 0.35 +1.2
751,275 + ABIE40_RS23020 0.35 -0.5
751,275 + ABIE40_RS23020 0.35 +2.0
751,275 + ABIE40_RS23020 0.35 +0.6
751,276 - ABIE40_RS23020 0.35 -1.0
751,276 - ABIE40_RS23020 0.35 -2.7
751,276 - ABIE40_RS23020 0.35 -2.2
751,276 - ABIE40_RS23020 0.35 +0.4
751,276 - ABIE40_RS23020 0.35 +0.1
751,276 - ABIE40_RS23020 0.35 -0.5
751,401 + ABIE40_RS23020 0.41 +0.9
751,401 + ABIE40_RS23020 0.41 +0.2
751,401 + ABIE40_RS23020 0.41 +1.7
751,401 + ABIE40_RS23020 0.41 -1.2
751,401 + ABIE40_RS23020 0.41 +0.7
751,401 + ABIE40_RS23020 0.41 -0.2
751,401 + ABIE40_RS23020 0.41 -0.6
751,401 + ABIE40_RS23020 0.41 +0.3
751,401 + ABIE40_RS23020 0.41 -0.2
751,402 - ABIE40_RS23020 0.41 +0.2
751,402 - ABIE40_RS23020 0.41 -0.3
751,402 - ABIE40_RS23020 0.41 +2.0
751,402 - ABIE40_RS23020 0.41 +0.8
751,402 - ABIE40_RS23020 0.41 +0.7
751,402 - ABIE40_RS23020 0.41 -1.4

Or see this region's nucleotide sequence