Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22870

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22865 and ABIE40_RS22870 are separated by 130 nucleotidesABIE40_RS22870 and ABIE40_RS22875 are separated by 33 nucleotidesABIE40_RS22875 and ABIE40_RS22880 overlap by 4 nucleotides ABIE40_RS22865: ABIE40_RS22865 - ABC transporter substrate-binding protein, at 719,162 to 720,100 _RS22865 ABIE40_RS22870: ABIE40_RS22870 - septum site-determining protein MinC, at 720,231 to 720,983 _RS22870 ABIE40_RS22875: ABIE40_RS22875 - septum site-determining protein MinD, at 721,017 to 721,832 _RS22875 ABIE40_RS22880: ABIE40_RS22880 - cell division topological specificity factor MinE, at 721,829 to 722,086 _RS22880 Position (kb) 720 721Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 719.405 kb on + strand, within ABIE40_RS22865at 719.405 kb on + strand, within ABIE40_RS22865at 719.405 kb on + strand, within ABIE40_RS22865at 719.406 kb on - strand, within ABIE40_RS22865at 719.406 kb on - strand, within ABIE40_RS22865at 719.406 kb on - strand, within ABIE40_RS22865at 719.421 kb on - strand, within ABIE40_RS22865at 719.485 kb on + strand, within ABIE40_RS22865at 719.486 kb on - strand, within ABIE40_RS22865at 719.756 kb on + strand, within ABIE40_RS22865at 719.757 kb on - strand, within ABIE40_RS22865at 719.784 kb on - strand, within ABIE40_RS22865at 719.784 kb on - strand, within ABIE40_RS22865at 719.911 kb on + strand, within ABIE40_RS22865at 719.911 kb on + strand, within ABIE40_RS22865at 719.911 kb on + strand, within ABIE40_RS22865at 719.911 kb on + strand, within ABIE40_RS22865at 719.911 kb on + strand, within ABIE40_RS22865at 719.912 kb on - strand, within ABIE40_RS22865at 719.912 kb on - strand, within ABIE40_RS22865at 719.912 kb on - strand, within ABIE40_RS22865at 719.921 kb on + strand, within ABIE40_RS22865at 719.922 kb on - strand, within ABIE40_RS22865at 720.005 kb on - strand, within ABIE40_RS22865at 720.014 kb on + strandat 720.014 kb on + strandat 720.014 kb on + strandat 720.015 kb on - strandat 720.093 kb on + strandat 720.093 kb on + strandat 720.093 kb on + strandat 720.093 kb on + strandat 720.094 kb on - strandat 720.094 kb on - strandat 720.094 kb on - strandat 720.094 kb on - strandat 720.094 kb on - strandat 720.098 kb on + strandat 720.098 kb on + strandat 720.098 kb on + strandat 720.098 kb on + strandat 720.098 kb on + strandat 720.098 kb on + strandat 720.099 kb on - strandat 720.099 kb on - strandat 720.099 kb on - strandat 720.176 kb on + strandat 720.180 kb on + strandat 720.202 kb on + strandat 720.202 kb on + strandat 720.237 kb on - strandat 720.458 kb on + strand, within ABIE40_RS22870at 720.458 kb on + strand, within ABIE40_RS22870at 720.459 kb on - strand, within ABIE40_RS22870at 720.779 kb on + strand, within ABIE40_RS22870at 720.780 kb on - strand, within ABIE40_RS22870at 720.784 kb on - strand, within ABIE40_RS22870at 720.841 kb on + strand, within ABIE40_RS22870at 720.841 kb on + strand, within ABIE40_RS22870at 720.888 kb on + strand, within ABIE40_RS22870at 720.888 kb on + strand, within ABIE40_RS22870at 720.888 kb on + strand, within ABIE40_RS22870at 720.889 kb on - strand, within ABIE40_RS22870at 720.981 kb on + strandat 720.982 kb on - strandat 721.017 kb on - strandat 721.022 kb on + strandat 721.023 kb on - strandat 721.030 kb on + strandat 721.030 kb on + strandat 721.030 kb on + strandat 721.030 kb on + strandat 721.030 kb on + strandat 721.030 kb on + strandat 721.030 kb on + strandat 721.031 kb on - strandat 721.031 kb on - strandat 721.031 kb on - strandat 721.031 kb on - strandat 721.031 kb on - strandat 721.031 kb on - strandat 721.031 kb on - strandat 721.037 kb on + strandat 721.189 kb on - strand, within ABIE40_RS22875at 721.677 kb on - strand, within ABIE40_RS22875at 721.728 kb on + strand, within ABIE40_RS22875at 721.728 kb on + strand, within ABIE40_RS22875at 721.729 kb on - strand, within ABIE40_RS22875

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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719,405 + ABIE40_RS22865 0.26 -0.9
719,405 + ABIE40_RS22865 0.26 +0.4
719,405 + ABIE40_RS22865 0.26 +0.4
719,406 - ABIE40_RS22865 0.26 +0.1
719,406 - ABIE40_RS22865 0.26 -1.1
719,406 - ABIE40_RS22865 0.26 -0.7
719,421 - ABIE40_RS22865 0.28 +0.7
719,485 + ABIE40_RS22865 0.34 +0.2
719,486 - ABIE40_RS22865 0.35 +1.2
719,756 + ABIE40_RS22865 0.63 -2.2
719,757 - ABIE40_RS22865 0.63 +1.8
719,784 - ABIE40_RS22865 0.66 -0.5
719,784 - ABIE40_RS22865 0.66 -0.6
719,911 + ABIE40_RS22865 0.80 +0.7
719,911 + ABIE40_RS22865 0.80 +0.9
719,911 + ABIE40_RS22865 0.80 +1.1
719,911 + ABIE40_RS22865 0.80 +0.5
719,911 + ABIE40_RS22865 0.80 +0.7
719,912 - ABIE40_RS22865 0.80 -0.7
719,912 - ABIE40_RS22865 0.80 -2.1
719,912 - ABIE40_RS22865 0.80 -1.8
719,921 + ABIE40_RS22865 0.81 -0.7
719,922 - ABIE40_RS22865 0.81 +0.1
720,005 - ABIE40_RS22865 0.90 -3.1
720,014 + +0.2
720,014 + +1.9
720,014 + +0.0
720,015 - -0.8
720,093 + -1.2
720,093 + -0.9
720,093 + -0.6
720,093 + -1.5
720,094 - +1.9
720,094 - -0.3
720,094 - -1.5
720,094 - -3.3
720,094 - -0.8
720,098 + +2.4
720,098 + +0.5
720,098 + +0.9
720,098 + -0.1
720,098 + +0.4
720,098 + +0.0
720,099 - -1.3
720,099 - -0.1
720,099 - -0.2
720,176 + -0.5
720,180 + +0.4
720,202 + -0.3
720,202 + +0.1
720,237 - -0.6
720,458 + ABIE40_RS22870 0.30 -0.1
720,458 + ABIE40_RS22870 0.30 -0.0
720,459 - ABIE40_RS22870 0.30 +1.6
720,779 + ABIE40_RS22870 0.73 -0.2
720,780 - ABIE40_RS22870 0.73 -1.8
720,784 - ABIE40_RS22870 0.73 +0.4
720,841 + ABIE40_RS22870 0.81 -0.3
720,841 + ABIE40_RS22870 0.81 +0.6
720,888 + ABIE40_RS22870 0.87 +3.3
720,888 + ABIE40_RS22870 0.87 +0.6
720,888 + ABIE40_RS22870 0.87 +2.4
720,889 - ABIE40_RS22870 0.87 -0.4
720,981 + +0.5
720,982 - +0.2
721,017 - +1.0
721,022 + -0.9
721,023 - +0.7
721,030 + -0.7
721,030 + -0.2
721,030 + +0.6
721,030 + -2.4
721,030 + +0.2
721,030 + -0.4
721,030 + -0.8
721,031 - -1.8
721,031 - +4.0
721,031 - -1.5
721,031 - -0.1
721,031 - -1.6
721,031 - -1.6
721,031 - -0.4
721,037 + -0.4
721,189 - ABIE40_RS22875 0.21 +1.7
721,677 - ABIE40_RS22875 0.81 +0.0
721,728 + ABIE40_RS22875 0.87 -1.8
721,728 + ABIE40_RS22875 0.87 -0.6
721,729 - ABIE40_RS22875 0.87 +0.3

Or see this region's nucleotide sequence