Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22420

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22415 and ABIE40_RS22420 overlap by 4 nucleotidesABIE40_RS22420 and ABIE40_RS22425 are separated by 3 nucleotidesABIE40_RS22425 and ABIE40_RS22430 overlap by 4 nucleotides ABIE40_RS22415: ABIE40_RS22415 - ABC transporter ATP-binding protein, at 614,784 to 615,890 _RS22415 ABIE40_RS22420: ABIE40_RS22420 - sugar ABC transporter permease, at 615,887 to 616,768 _RS22420 ABIE40_RS22425: ABIE40_RS22425 - ABC transporter permease subunit, at 616,772 to 617,614 _RS22425 ABIE40_RS22430: ABIE40_RS22430 - APC family permease, at 617,611 to 618,813 _RS22430 Position (kb) 615 616 617Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 614.981 kb on + strand, within ABIE40_RS22415at 614.981 kb on + strand, within ABIE40_RS22415at 614.981 kb on + strand, within ABIE40_RS22415at 614.982 kb on - strand, within ABIE40_RS22415at 614.982 kb on - strand, within ABIE40_RS22415at 614.982 kb on - strand, within ABIE40_RS22415at 615.087 kb on + strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.104 kb on + strand, within ABIE40_RS22415at 615.104 kb on + strand, within ABIE40_RS22415at 615.105 kb on - strand, within ABIE40_RS22415at 615.402 kb on + strand, within ABIE40_RS22415at 615.403 kb on - strand, within ABIE40_RS22415at 615.403 kb on - strand, within ABIE40_RS22415at 615.470 kb on + strand, within ABIE40_RS22415at 615.501 kb on + strand, within ABIE40_RS22415at 615.502 kb on - strand, within ABIE40_RS22415at 615.502 kb on - strand, within ABIE40_RS22415at 615.536 kb on + strand, within ABIE40_RS22415at 615.741 kb on + strand, within ABIE40_RS22415at 615.741 kb on + strand, within ABIE40_RS22415at 615.795 kb on + strandat 615.796 kb on - strandat 615.989 kb on + strand, within ABIE40_RS22420at 615.990 kb on - strand, within ABIE40_RS22420at 615.990 kb on - strand, within ABIE40_RS22420at 615.990 kb on - strand, within ABIE40_RS22420at 616.046 kb on + strand, within ABIE40_RS22420at 616.047 kb on - strand, within ABIE40_RS22420at 616.047 kb on - strand, within ABIE40_RS22420at 616.055 kb on + strand, within ABIE40_RS22420at 616.055 kb on + strand, within ABIE40_RS22420at 616.085 kb on + strand, within ABIE40_RS22420at 616.085 kb on + strand, within ABIE40_RS22420at 616.085 kb on + strand, within ABIE40_RS22420at 616.086 kb on - strand, within ABIE40_RS22420at 616.343 kb on + strand, within ABIE40_RS22420at 616.343 kb on + strand, within ABIE40_RS22420at 616.343 kb on + strand, within ABIE40_RS22420at 616.344 kb on - strand, within ABIE40_RS22420at 616.344 kb on - strand, within ABIE40_RS22420at 616.344 kb on - strand, within ABIE40_RS22420at 616.409 kb on + strand, within ABIE40_RS22420at 616.409 kb on + strand, within ABIE40_RS22420at 616.409 kb on + strand, within ABIE40_RS22420at 616.409 kb on + strand, within ABIE40_RS22420at 616.409 kb on + strand, within ABIE40_RS22420at 616.410 kb on - strand, within ABIE40_RS22420at 616.410 kb on - strand, within ABIE40_RS22420at 616.411 kb on + strand, within ABIE40_RS22420at 616.411 kb on + strand, within ABIE40_RS22420at 616.411 kb on + strand, within ABIE40_RS22420at 616.412 kb on - strand, within ABIE40_RS22420at 616.412 kb on - strand, within ABIE40_RS22420at 616.412 kb on - strand, within ABIE40_RS22420at 616.412 kb on - strand, within ABIE40_RS22420at 616.622 kb on + strand, within ABIE40_RS22420at 616.623 kb on - strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.643 kb on + strand, within ABIE40_RS22420at 616.644 kb on - strand, within ABIE40_RS22420at 616.644 kb on - strand, within ABIE40_RS22420at 616.644 kb on - strand, within ABIE40_RS22420at 616.644 kb on - strand, within ABIE40_RS22420at 616.736 kb on + strandat 616.737 kb on - strandat 616.941 kb on - strand, within ABIE40_RS22425at 616.941 kb on - strand, within ABIE40_RS22425at 616.987 kb on + strand, within ABIE40_RS22425at 616.988 kb on - strand, within ABIE40_RS22425at 616.988 kb on - strand, within ABIE40_RS22425at 616.988 kb on - strand, within ABIE40_RS22425at 616.988 kb on - strand, within ABIE40_RS22425at 617.049 kb on - strand, within ABIE40_RS22425at 617.049 kb on - strand, within ABIE40_RS22425at 617.132 kb on + strand, within ABIE40_RS22425at 617.132 kb on + strand, within ABIE40_RS22425at 617.133 kb on - strand, within ABIE40_RS22425at 617.180 kb on - strand, within ABIE40_RS22425at 617.272 kb on + strand, within ABIE40_RS22425at 617.331 kb on + strand, within ABIE40_RS22425at 617.332 kb on - strand, within ABIE40_RS22425at 617.456 kb on + strand, within ABIE40_RS22425at 617.456 kb on + strand, within ABIE40_RS22425at 617.519 kb on + strand, within ABIE40_RS22425at 617.519 kb on + strand, within ABIE40_RS22425at 617.520 kb on - strand, within ABIE40_RS22425at 617.520 kb on - strand, within ABIE40_RS22425at 617.612 kb on + strandat 617.613 kb on - strandat 617.699 kb on + strandat 617.699 kb on + strandat 617.699 kb on + strandat 617.699 kb on + strandat 617.700 kb on - strandat 617.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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614,981 + ABIE40_RS22415 0.18 -4.1
614,981 + ABIE40_RS22415 0.18 -1.5
614,981 + ABIE40_RS22415 0.18 -0.2
614,982 - ABIE40_RS22415 0.18 -2.1
614,982 - ABIE40_RS22415 0.18 -2.7
614,982 - ABIE40_RS22415 0.18 -2.5
615,087 + ABIE40_RS22415 0.27 -1.8
615,088 - ABIE40_RS22415 0.27 -4.3
615,088 - ABIE40_RS22415 0.27 -1.8
615,088 - ABIE40_RS22415 0.27 -1.7
615,088 - ABIE40_RS22415 0.27 -2.4
615,088 - ABIE40_RS22415 0.27 -1.7
615,104 + ABIE40_RS22415 0.29 -3.5
615,104 + ABIE40_RS22415 0.29 -3.4
615,105 - ABIE40_RS22415 0.29 -5.4
615,402 + ABIE40_RS22415 0.56 -4.7
615,403 - ABIE40_RS22415 0.56 -3.4
615,403 - ABIE40_RS22415 0.56 -2.5
615,470 + ABIE40_RS22415 0.62 -2.6
615,501 + ABIE40_RS22415 0.65 -4.1
615,502 - ABIE40_RS22415 0.65 -4.6
615,502 - ABIE40_RS22415 0.65 +2.0
615,536 + ABIE40_RS22415 0.68 -3.6
615,741 + ABIE40_RS22415 0.86 -3.2
615,741 + ABIE40_RS22415 0.86 -2.6
615,795 + -2.2
615,796 - -4.0
615,989 + ABIE40_RS22420 0.12 -3.0
615,990 - ABIE40_RS22420 0.12 -3.4
615,990 - ABIE40_RS22420 0.12 -0.3
615,990 - ABIE40_RS22420 0.12 -5.5
616,046 + ABIE40_RS22420 0.18 +0.5
616,047 - ABIE40_RS22420 0.18 -5.3
616,047 - ABIE40_RS22420 0.18 -1.2
616,055 + ABIE40_RS22420 0.19 -3.4
616,055 + ABIE40_RS22420 0.19 -3.6
616,085 + ABIE40_RS22420 0.22 -2.8
616,085 + ABIE40_RS22420 0.22 -3.3
616,085 + ABIE40_RS22420 0.22 -4.9
616,086 - ABIE40_RS22420 0.23 -1.7
616,343 + ABIE40_RS22420 0.52 -3.7
616,343 + ABIE40_RS22420 0.52 -4.6
616,343 + ABIE40_RS22420 0.52 -1.3
616,344 - ABIE40_RS22420 0.52 -3.9
616,344 - ABIE40_RS22420 0.52 -2.6
616,344 - ABIE40_RS22420 0.52 -1.5
616,409 + ABIE40_RS22420 0.59 -0.2
616,409 + ABIE40_RS22420 0.59 -2.7
616,409 + ABIE40_RS22420 0.59 +0.4
616,409 + ABIE40_RS22420 0.59 -5.2
616,409 + ABIE40_RS22420 0.59 -3.3
616,410 - ABIE40_RS22420 0.59 -5.4
616,410 - ABIE40_RS22420 0.59 -5.1
616,411 + ABIE40_RS22420 0.59 -2.6
616,411 + ABIE40_RS22420 0.59 -3.4
616,411 + ABIE40_RS22420 0.59 -1.2
616,412 - ABIE40_RS22420 0.60 -1.2
616,412 - ABIE40_RS22420 0.60 -3.2
616,412 - ABIE40_RS22420 0.60 -5.1
616,412 - ABIE40_RS22420 0.60 -2.3
616,622 + ABIE40_RS22420 0.83 -1.0
616,623 - ABIE40_RS22420 0.83 -4.0
616,643 + ABIE40_RS22420 0.86 -3.5
616,643 + ABIE40_RS22420 0.86 -2.1
616,643 + ABIE40_RS22420 0.86 -3.0
616,643 + ABIE40_RS22420 0.86 -1.9
616,643 + ABIE40_RS22420 0.86 -2.0
616,643 + ABIE40_RS22420 0.86 -2.0
616,643 + ABIE40_RS22420 0.86 -1.5
616,644 - ABIE40_RS22420 0.86 -5.7
616,644 - ABIE40_RS22420 0.86 -3.1
616,644 - ABIE40_RS22420 0.86 -2.9
616,644 - ABIE40_RS22420 0.86 -1.8
616,736 + +2.0
616,737 - -1.6
616,941 - ABIE40_RS22425 0.20 -2.8
616,941 - ABIE40_RS22425 0.20 -2.5
616,987 + ABIE40_RS22425 0.26 -3.1
616,988 - ABIE40_RS22425 0.26 -1.9
616,988 - ABIE40_RS22425 0.26 -2.3
616,988 - ABIE40_RS22425 0.26 -3.5
616,988 - ABIE40_RS22425 0.26 -2.5
617,049 - ABIE40_RS22425 0.33 +2.0
617,049 - ABIE40_RS22425 0.33 -2.4
617,132 + ABIE40_RS22425 0.43 -5.4
617,132 + ABIE40_RS22425 0.43 -4.4
617,133 - ABIE40_RS22425 0.43 -2.9
617,180 - ABIE40_RS22425 0.48 -1.3
617,272 + ABIE40_RS22425 0.59 -4.2
617,331 + ABIE40_RS22425 0.66 -0.8
617,332 - ABIE40_RS22425 0.66 -3.0
617,456 + ABIE40_RS22425 0.81 +0.0
617,456 + ABIE40_RS22425 0.81 -4.9
617,519 + ABIE40_RS22425 0.89 -4.1
617,519 + ABIE40_RS22425 0.89 -5.4
617,520 - ABIE40_RS22425 0.89 -4.2
617,520 - ABIE40_RS22425 0.89 -2.5
617,612 + -0.7
617,613 - -2.5
617,699 + -1.2
617,699 + -2.2
617,699 + +0.5
617,699 + +0.6
617,700 - -0.2
617,700 - -1.2

Or see this region's nucleotide sequence