Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21905

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21900 and ABIE40_RS21905 are separated by 219 nucleotidesABIE40_RS21905 and ABIE40_RS21910 are separated by 29 nucleotides ABIE40_RS21900: ABIE40_RS21900 - dihydrodipicolinate synthase family protein, at 504,111 to 505,073 _RS21900 ABIE40_RS21905: ABIE40_RS21905 - Ldh family oxidoreductase, at 505,293 to 506,333 _RS21905 ABIE40_RS21910: ABIE40_RS21910 - M20 aminoacylase family protein, at 506,363 to 507,541 _RS21910 Position (kb) 505 506 507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 504.516 kb on + strand, within ABIE40_RS21900at 504.516 kb on + strand, within ABIE40_RS21900at 504.517 kb on - strand, within ABIE40_RS21900at 504.517 kb on - strand, within ABIE40_RS21900at 504.528 kb on + strand, within ABIE40_RS21900at 504.528 kb on + strand, within ABIE40_RS21900at 504.529 kb on - strand, within ABIE40_RS21900at 504.529 kb on - strand, within ABIE40_RS21900at 504.529 kb on - strand, within ABIE40_RS21900at 504.531 kb on + strand, within ABIE40_RS21900at 504.531 kb on + strand, within ABIE40_RS21900at 504.532 kb on - strand, within ABIE40_RS21900at 504.532 kb on - strand, within ABIE40_RS21900at 504.532 kb on - strand, within ABIE40_RS21900at 504.630 kb on + strand, within ABIE40_RS21900at 504.936 kb on + strand, within ABIE40_RS21900at 504.936 kb on + strand, within ABIE40_RS21900at 504.936 kb on + strand, within ABIE40_RS21900at 504.937 kb on - strand, within ABIE40_RS21900at 504.937 kb on - strand, within ABIE40_RS21900at 504.987 kb on + strandat 504.988 kb on - strandat 505.023 kb on + strandat 505.024 kb on - strandat 505.062 kb on + strandat 505.062 kb on + strandat 505.105 kb on + strandat 505.290 kb on + strandat 505.290 kb on + strandat 505.291 kb on - strandat 505.294 kb on + strandat 505.294 kb on + strandat 505.294 kb on + strandat 505.294 kb on + strandat 505.295 kb on - strandat 505.295 kb on - strandat 505.295 kb on - strandat 505.295 kb on - strandat 505.295 kb on - strandat 505.295 kb on - strandat 505.295 kb on - strandat 505.394 kb on + strandat 505.394 kb on + strandat 505.394 kb on + strandat 505.395 kb on - strandat 505.395 kb on - strandat 505.395 kb on - strandat 505.396 kb on + strandat 505.558 kb on + strand, within ABIE40_RS21905at 505.559 kb on - strand, within ABIE40_RS21905at 505.798 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.804 kb on + strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.805 kb on - strand, within ABIE40_RS21905at 505.895 kb on - strand, within ABIE40_RS21905at 505.895 kb on - strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.182 kb on + strand, within ABIE40_RS21905at 506.183 kb on - strand, within ABIE40_RS21905at 506.339 kb on + strandat 506.339 kb on + strandat 506.339 kb on + strandat 506.340 kb on - strandat 506.365 kb on - strandat 506.409 kb on + strandat 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.523 kb on + strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.524 kb on - strand, within ABIE40_RS21910at 506.556 kb on + strand, within ABIE40_RS21910at 506.556 kb on + strand, within ABIE40_RS21910at 506.557 kb on - strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.826 kb on + strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.827 kb on - strand, within ABIE40_RS21910at 506.899 kb on + strand, within ABIE40_RS21910at 506.899 kb on + strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 506.900 kb on - strand, within ABIE40_RS21910at 507.049 kb on + strand, within ABIE40_RS21910at 507.049 kb on + strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.050 kb on - strand, within ABIE40_RS21910at 507.060 kb on + strand, within ABIE40_RS21910at 507.060 kb on + strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.061 kb on - strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.267 kb on + strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910at 507.268 kb on - strand, within ABIE40_RS21910

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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504,516 + ABIE40_RS21900 0.42 +0.4
504,516 + ABIE40_RS21900 0.42 -0.2
504,517 - ABIE40_RS21900 0.42 +0.9
504,517 - ABIE40_RS21900 0.42 +0.1
504,528 + ABIE40_RS21900 0.43 -0.4
504,528 + ABIE40_RS21900 0.43 +0.0
504,529 - ABIE40_RS21900 0.43 -1.0
504,529 - ABIE40_RS21900 0.43 -1.1
504,529 - ABIE40_RS21900 0.43 +0.9
504,531 + ABIE40_RS21900 0.44 -0.3
504,531 + ABIE40_RS21900 0.44 -0.2
504,532 - ABIE40_RS21900 0.44 +0.1
504,532 - ABIE40_RS21900 0.44 +2.5
504,532 - ABIE40_RS21900 0.44 +0.8
504,630 + ABIE40_RS21900 0.54 +2.1
504,936 + ABIE40_RS21900 0.86 -0.9
504,936 + ABIE40_RS21900 0.86 -0.0
504,936 + ABIE40_RS21900 0.86 +0.0
504,937 - ABIE40_RS21900 0.86 -0.8
504,937 - ABIE40_RS21900 0.86 -0.3
504,987 + +1.8
504,988 - +1.4
505,023 + -1.1
505,024 - +0.3
505,062 + +1.5
505,062 + -0.1
505,105 + -0.5
505,290 + -0.9
505,290 + +0.1
505,291 - -0.3
505,294 + -0.4
505,294 + +0.1
505,294 + +1.4
505,294 + -1.2
505,295 - -0.1
505,295 - -1.4
505,295 - -0.6
505,295 - -1.6
505,295 - -3.2
505,295 - -0.1
505,295 - -0.2
505,394 + -0.2
505,394 + -0.1
505,394 + +1.5
505,395 - -0.1
505,395 - -0.1
505,395 - -1.6
505,396 + -0.3
505,558 + ABIE40_RS21905 0.25 -0.2
505,559 - ABIE40_RS21905 0.26 -2.4
505,798 + ABIE40_RS21905 0.49 +2.0
505,804 + ABIE40_RS21905 0.49 +0.2
505,804 + ABIE40_RS21905 0.49 +0.6
505,804 + ABIE40_RS21905 0.49 +0.3
505,804 + ABIE40_RS21905 0.49 +0.5
505,804 + ABIE40_RS21905 0.49 -0.1
505,804 + ABIE40_RS21905 0.49 -0.4
505,805 - ABIE40_RS21905 0.49 +1.2
505,805 - ABIE40_RS21905 0.49 +0.5
505,805 - ABIE40_RS21905 0.49 -2.3
505,805 - ABIE40_RS21905 0.49 -0.4
505,805 - ABIE40_RS21905 0.49 +0.3
505,805 - ABIE40_RS21905 0.49 -0.2
505,895 - ABIE40_RS21905 0.58 -1.2
505,895 - ABIE40_RS21905 0.58 -0.2
506,182 + ABIE40_RS21905 0.85 -0.6
506,182 + ABIE40_RS21905 0.85 +3.7
506,182 + ABIE40_RS21905 0.85 +0.5
506,183 - ABIE40_RS21905 0.85 +0.3
506,339 + +1.5
506,339 + +0.1
506,339 + -0.4
506,340 - -0.2
506,365 - -0.1
506,409 + -1.1
506,523 + ABIE40_RS21910 0.14 +0.6
506,523 + ABIE40_RS21910 0.14 -1.1
506,523 + ABIE40_RS21910 0.14 -0.7
506,523 + ABIE40_RS21910 0.14 +0.2
506,523 + ABIE40_RS21910 0.14 +0.5
506,523 + ABIE40_RS21910 0.14 -0.3
506,524 - ABIE40_RS21910 0.14 +0.4
506,524 - ABIE40_RS21910 0.14 +0.7
506,524 - ABIE40_RS21910 0.14 +4.0
506,524 - ABIE40_RS21910 0.14 -0.5
506,524 - ABIE40_RS21910 0.14 -1.5
506,524 - ABIE40_RS21910 0.14 -0.0
506,556 + ABIE40_RS21910 0.16 -1.0
506,556 + ABIE40_RS21910 0.16 -0.4
506,557 - ABIE40_RS21910 0.16 +0.1
506,826 + ABIE40_RS21910 0.39 +0.1
506,826 + ABIE40_RS21910 0.39 -0.6
506,826 + ABIE40_RS21910 0.39 +2.1
506,826 + ABIE40_RS21910 0.39 +0.4
506,826 + ABIE40_RS21910 0.39 -1.0
506,827 - ABIE40_RS21910 0.39 -0.1
506,827 - ABIE40_RS21910 0.39 +0.7
506,827 - ABIE40_RS21910 0.39 +0.9
506,827 - ABIE40_RS21910 0.39 -0.9
506,827 - ABIE40_RS21910 0.39 +0.7
506,827 - ABIE40_RS21910 0.39 -3.5
506,827 - ABIE40_RS21910 0.39 -0.9
506,827 - ABIE40_RS21910 0.39 +0.3
506,827 - ABIE40_RS21910 0.39 -1.9
506,827 - ABIE40_RS21910 0.39 -0.4
506,827 - ABIE40_RS21910 0.39 -0.1
506,899 + ABIE40_RS21910 0.45 +1.6
506,899 + ABIE40_RS21910 0.45 -1.2
506,900 - ABIE40_RS21910 0.46 +0.2
506,900 - ABIE40_RS21910 0.46 -1.4
506,900 - ABIE40_RS21910 0.46 -0.7
506,900 - ABIE40_RS21910 0.46 -1.2
507,049 + ABIE40_RS21910 0.58 +1.5
507,049 + ABIE40_RS21910 0.58 -2.0
507,050 - ABIE40_RS21910 0.58 +0.1
507,050 - ABIE40_RS21910 0.58 +1.7
507,050 - ABIE40_RS21910 0.58 -0.7
507,060 + ABIE40_RS21910 0.59 +0.1
507,060 + ABIE40_RS21910 0.59 +0.8
507,061 - ABIE40_RS21910 0.59 -0.7
507,061 - ABIE40_RS21910 0.59 +0.0
507,061 - ABIE40_RS21910 0.59 +0.1
507,267 + ABIE40_RS21910 0.77 -2.1
507,267 + ABIE40_RS21910 0.77 -1.7
507,267 + ABIE40_RS21910 0.77 -0.0
507,268 - ABIE40_RS21910 0.77 +0.7
507,268 - ABIE40_RS21910 0.77 -0.8
507,268 - ABIE40_RS21910 0.77 +1.5

Or see this region's nucleotide sequence