Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS20250 and ABIE40_RS20255 overlap by 4 nucleotides ABIE40_RS20255 and ABIE40_RS20260 are separated by 4 nucleotides ABIE40_RS20260 and ABIE40_RS20265 are separated by 125 nucleotides ABIE40_RS20265 and ABIE40_RS20270 are separated by 648 nucleotides
ABIE40_RS20250: ABIE40_RS20250 - catalase family peroxidase, at 149,378 to 150,421
_RS20250
ABIE40_RS20255: ABIE40_RS20255 - cytochrome b/b6 domain-containing protein, at 150,418 to 150,642
_RS20255
ABIE40_RS20260: ABIE40_RS20260 - cytochrome b, at 150,647 to 151,099
_RS20260
ABIE40_RS20265: ABIE40_RS20265 - methyl-accepting chemotaxis protein, at 151,225 to 153,249
_RS20265
ABIE40_RS20270: ABIE40_RS20270 - response regulator, at 153,898 to 154,338
_RS20270
Position (kb) 151
152
153
154 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.269 kb on - strand, within ABIE40_RS20250 at 150.359 kb on + strand at 150.359 kb on + strand at 150.390 kb on - strand at 150.390 kb on - strand at 150.538 kb on + strand, within ABIE40_RS20255 at 150.538 kb on + strand, within ABIE40_RS20255 at 150.538 kb on + strand, within ABIE40_RS20255 at 150.538 kb on + strand, within ABIE40_RS20255 at 150.538 kb on + strand, within ABIE40_RS20255 at 150.609 kb on - strand, within ABIE40_RS20255 at 150.609 kb on - strand, within ABIE40_RS20255 at 150.609 kb on - strand, within ABIE40_RS20255 at 150.609 kb on - strand, within ABIE40_RS20255 at 150.843 kb on - strand, within ABIE40_RS20260 at 150.989 kb on + strand, within ABIE40_RS20260 at 150.990 kb on - strand, within ABIE40_RS20260 at 151.097 kb on + strand at 151.097 kb on + strand at 151.097 kb on + strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.098 kb on - strand at 151.185 kb on + strand at 151.185 kb on + strand at 151.186 kb on - strand at 151.186 kb on - strand at 151.562 kb on + strand, within ABIE40_RS20265 at 151.566 kb on + strand, within ABIE40_RS20265 at 151.566 kb on + strand, within ABIE40_RS20265 at 151.566 kb on + strand, within ABIE40_RS20265 at 151.567 kb on - strand, within ABIE40_RS20265 at 151.567 kb on - strand, within ABIE40_RS20265 at 151.753 kb on - strand, within ABIE40_RS20265 at 152.510 kb on + strand, within ABIE40_RS20265 at 152.510 kb on + strand, within ABIE40_RS20265 at 152.510 kb on + strand, within ABIE40_RS20265 at 152.510 kb on + strand, within ABIE40_RS20265 at 152.510 kb on + strand, within ABIE40_RS20265 at 152.510 kb on + strand, within ABIE40_RS20265 at 152.511 kb on - strand, within ABIE40_RS20265 at 152.511 kb on - strand, within ABIE40_RS20265 at 152.603 kb on + strand, within ABIE40_RS20265 at 152.603 kb on + strand, within ABIE40_RS20265 at 152.604 kb on - strand, within ABIE40_RS20265 at 152.711 kb on + strand, within ABIE40_RS20265 at 152.712 kb on - strand, within ABIE40_RS20265 at 152.712 kb on - strand, within ABIE40_RS20265 at 152.954 kb on + strand, within ABIE40_RS20265 at 152.967 kb on - strand, within ABIE40_RS20265 at 152.967 kb on - strand, within ABIE40_RS20265 at 152.967 kb on - strand, within ABIE40_RS20265 at 153.017 kb on + strand, within ABIE40_RS20265 at 153.018 kb on - strand, within ABIE40_RS20265 at 153.054 kb on - strand at 153.054 kb on - strand at 153.054 kb on - strand at 153.054 kb on - strand at 153.054 kb on - strand at 153.113 kb on + strand at 153.120 kb on + strand at 153.132 kb on + strand at 153.135 kb on - strand at 153.167 kb on + strand at 153.168 kb on - strand at 153.229 kb on - strand at 153.268 kb on + strand at 153.268 kb on + strand at 153.362 kb on + strand at 153.362 kb on + strand at 153.368 kb on - strand at 153.401 kb on - strand at 153.465 kb on + strand at 153.648 kb on + strand at 153.708 kb on + strand at 153.709 kb on - strand at 153.709 kb on - strand at 153.772 kb on - strand at 153.775 kb on - strand at 153.962 kb on + strand, within ABIE40_RS20270 at 153.962 kb on + strand, within ABIE40_RS20270
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 150,269 - ABIE40_RS20250 0.85 -0.4 150,359 + -0.9 150,359 + +0.3 150,390 - +0.1 150,390 - +0.1 150,538 + ABIE40_RS20255 0.53 -0.5 150,538 + ABIE40_RS20255 0.53 -1.2 150,538 + ABIE40_RS20255 0.53 -2.5 150,538 + ABIE40_RS20255 0.53 +0.4 150,538 + ABIE40_RS20255 0.53 +0.1 150,609 - ABIE40_RS20255 0.85 +0.4 150,609 - ABIE40_RS20255 0.85 -0.7 150,609 - ABIE40_RS20255 0.85 +1.8 150,609 - ABIE40_RS20255 0.85 +0.1 150,843 - ABIE40_RS20260 0.43 +1.0 150,989 + ABIE40_RS20260 0.75 -0.0 150,990 - ABIE40_RS20260 0.76 +0.2 151,097 + +0.8 151,097 + +0.3 151,097 + -1.2 151,098 - -0.1 151,098 - +0.5 151,098 - -0.5 151,098 - -0.7 151,098 - +0.9 151,098 - +0.5 151,098 - +0.6 151,098 - +0.5 151,185 + -1.2 151,185 + +1.8 151,186 - +1.1 151,186 - +1.5 151,562 + ABIE40_RS20265 0.17 -0.2 151,566 + ABIE40_RS20265 0.17 +0.4 151,566 + ABIE40_RS20265 0.17 +0.6 151,566 + ABIE40_RS20265 0.17 -0.4 151,567 - ABIE40_RS20265 0.17 +0.3 151,567 - ABIE40_RS20265 0.17 +0.4 151,753 - ABIE40_RS20265 0.26 -1.4 152,510 + ABIE40_RS20265 0.63 +0.7 152,510 + ABIE40_RS20265 0.63 -1.2 152,510 + ABIE40_RS20265 0.63 -0.9 152,510 + ABIE40_RS20265 0.63 +1.2 152,510 + ABIE40_RS20265 0.63 +0.1 152,510 + ABIE40_RS20265 0.63 +0.6 152,511 - ABIE40_RS20265 0.64 -0.2 152,511 - ABIE40_RS20265 0.64 +0.3 152,603 + ABIE40_RS20265 0.68 +0.9 152,603 + ABIE40_RS20265 0.68 +2.5 152,604 - ABIE40_RS20265 0.68 +1.5 152,711 + ABIE40_RS20265 0.73 +0.1 152,712 - ABIE40_RS20265 0.73 +0.6 152,712 - ABIE40_RS20265 0.73 +0.8 152,954 + ABIE40_RS20265 0.85 -0.2 152,967 - ABIE40_RS20265 0.86 +2.1 152,967 - ABIE40_RS20265 0.86 +1.8 152,967 - ABIE40_RS20265 0.86 +0.9 153,017 + ABIE40_RS20265 0.88 -0.3 153,018 - ABIE40_RS20265 0.89 -0.2 153,054 - +1.5 153,054 - -1.9 153,054 - -2.2 153,054 - +1.4 153,054 - +1.1 153,113 + +2.1 153,120 + -1.7 153,132 + -1.6 153,135 - +0.7 153,167 + -0.3 153,168 - +1.8 153,229 - -0.1 153,268 + +1.4 153,268 + -0.2 153,362 + +2.7 153,362 + -0.7 153,368 - -1.8 153,401 - +0.5 153,465 + +0.3 153,648 + -0.4 153,708 + +0.3 153,709 - -1.0 153,709 - -0.6 153,772 - -0.6 153,775 - +1.9 153,962 + ABIE40_RS20270 0.15 +1.8 153,962 + ABIE40_RS20270 0.15 -0.0
Or see this region's nucleotide sequence