Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19330

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19320 and ABIE40_RS19325 are separated by 88 nucleotidesABIE40_RS19325 and ABIE40_RS19330 are separated by 75 nucleotidesABIE40_RS19330 and ABIE40_RS19335 are separated by 2 nucleotides ABIE40_RS19320: ABIE40_RS19320 - DUF2852 domain-containing protein, at 3,878,776 to 3,879,210 _RS19320 ABIE40_RS19325: ABIE40_RS19325 - SprT family zinc-dependent metalloprotease, at 3,879,299 to 3,880,063 _RS19325 ABIE40_RS19330: ABIE40_RS19330 - phosphoribosylanthranilate isomerase, at 3,880,139 to 3,880,807 _RS19330 ABIE40_RS19335: ABIE40_RS19335 - tryptophan synthase subunit beta, at 3,880,810 to 3,882,030 _RS19335 Position (kb) 3880 3881Strain fitness (log2 ratio) -3 -2 -1 0 1at 3879.298 kb on + strandat 3879.298 kb on + strandat 3879.299 kb on - strandat 3879.671 kb on + strand, within ABIE40_RS19325at 3880.082 kb on + strandat 3880.083 kb on - strandat 3880.468 kb on + strand, within ABIE40_RS19330at 3880.500 kb on - strand, within ABIE40_RS19330at 3880.500 kb on - strand, within ABIE40_RS19330at 3880.502 kb on - strand, within ABIE40_RS19330at 3880.622 kb on + strand, within ABIE40_RS19330at 3880.622 kb on + strand, within ABIE40_RS19330at 3880.622 kb on + strand, within ABIE40_RS19330at 3880.622 kb on + strand, within ABIE40_RS19330at 3880.622 kb on + strand, within ABIE40_RS19330at 3880.622 kb on + strand, within ABIE40_RS19330at 3880.623 kb on - strand, within ABIE40_RS19330at 3881.699 kb on - strand, within ABIE40_RS19335

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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3,879,298 + +0.1
3,879,298 + +1.4
3,879,299 - -0.8
3,879,671 + ABIE40_RS19325 0.49 -0.2
3,880,082 + -0.4
3,880,083 - -1.8
3,880,468 + ABIE40_RS19330 0.49 -1.7
3,880,500 - ABIE40_RS19330 0.54 -1.0
3,880,500 - ABIE40_RS19330 0.54 -1.5
3,880,502 - ABIE40_RS19330 0.54 -3.1
3,880,622 + ABIE40_RS19330 0.72 -1.1
3,880,622 + ABIE40_RS19330 0.72 -1.0
3,880,622 + ABIE40_RS19330 0.72 -1.4
3,880,622 + ABIE40_RS19330 0.72 -3.2
3,880,622 + ABIE40_RS19330 0.72 -2.9
3,880,622 + ABIE40_RS19330 0.72 -2.0
3,880,623 - ABIE40_RS19330 0.72 -2.2
3,881,699 - ABIE40_RS19335 0.73 -1.2

Or see this region's nucleotide sequence