Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09695

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09690 and ABIE40_RS09695 are separated by 182 nucleotidesABIE40_RS09695 and ABIE40_RS09700 are separated by 66 nucleotides ABIE40_RS09690: ABIE40_RS09690 - hypothetical protein, at 1,871,175 to 1,872,275 _RS09690 ABIE40_RS09695: ABIE40_RS09695 - hypothetical protein, at 1,872,458 to 1,872,670 _RS09695 ABIE40_RS09700: ABIE40_RS09700 - threonine--tRNA ligase, at 1,872,737 to 1,874,743 _RS09700 Position (kb) 1872 1873Strain fitness (log2 ratio) -2 -1 0 1 2at 1871.778 kb on + strand, within ABIE40_RS09690at 1871.778 kb on + strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.779 kb on - strand, within ABIE40_RS09690at 1871.999 kb on + strand, within ABIE40_RS09690at 1872.000 kb on - strand, within ABIE40_RS09690at 1872.000 kb on - strand, within ABIE40_RS09690at 1872.021 kb on + strand, within ABIE40_RS09690at 1872.022 kb on - strand, within ABIE40_RS09690at 1872.038 kb on + strand, within ABIE40_RS09690at 1872.055 kb on - strand, within ABIE40_RS09690at 1872.055 kb on - strand, within ABIE40_RS09690at 1872.055 kb on - strand, within ABIE40_RS09690at 1872.089 kb on + strand, within ABIE40_RS09690at 1872.090 kb on - strand, within ABIE40_RS09690at 1872.365 kb on + strandat 1872.383 kb on + strandat 1872.524 kb on + strand, within ABIE40_RS09695at 1872.524 kb on + strand, within ABIE40_RS09695at 1872.525 kb on - strand, within ABIE40_RS09695at 1872.666 kb on + strandat 1872.667 kb on - strandat 1872.667 kb on - strandat 1872.709 kb on + strandat 1872.709 kb on + strandat 1872.709 kb on + strandat 1872.709 kb on + strandat 1872.709 kb on + strandat 1872.709 kb on + strandat 1872.710 kb on - strandat 1872.710 kb on - strandat 1872.710 kb on - strandat 1872.710 kb on - strandat 1872.710 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,871,778 + ABIE40_RS09690 0.55 -1.6
1,871,778 + ABIE40_RS09690 0.55 +1.4
1,871,779 - ABIE40_RS09690 0.55 -0.5
1,871,779 - ABIE40_RS09690 0.55 +0.3
1,871,779 - ABIE40_RS09690 0.55 -0.6
1,871,779 - ABIE40_RS09690 0.55 -0.5
1,871,779 - ABIE40_RS09690 0.55 -1.5
1,871,779 - ABIE40_RS09690 0.55 +0.2
1,871,779 - ABIE40_RS09690 0.55 -0.6
1,871,779 - ABIE40_RS09690 0.55 -2.6
1,871,999 + ABIE40_RS09690 0.75 +0.1
1,872,000 - ABIE40_RS09690 0.75 -1.4
1,872,000 - ABIE40_RS09690 0.75 -1.6
1,872,021 + ABIE40_RS09690 0.77 -0.1
1,872,022 - ABIE40_RS09690 0.77 -0.5
1,872,038 + ABIE40_RS09690 0.78 +0.8
1,872,055 - ABIE40_RS09690 0.80 -0.2
1,872,055 - ABIE40_RS09690 0.80 -2.0
1,872,055 - ABIE40_RS09690 0.80 +1.9
1,872,089 + ABIE40_RS09690 0.83 +1.5
1,872,090 - ABIE40_RS09690 0.83 -0.4
1,872,365 + +0.4
1,872,383 + +0.4
1,872,524 + ABIE40_RS09695 0.31 -2.0
1,872,524 + ABIE40_RS09695 0.31 +2.6
1,872,525 - ABIE40_RS09695 0.31 -0.4
1,872,666 + +0.6
1,872,667 - -1.5
1,872,667 - -0.1
1,872,709 + -0.2
1,872,709 + +0.3
1,872,709 + +1.2
1,872,709 + +1.4
1,872,709 + +1.4
1,872,709 + +0.5
1,872,710 - -0.2
1,872,710 - +1.4
1,872,710 - -0.8
1,872,710 - -1.3
1,872,710 - +0.7

Or see this region's nucleotide sequence