Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09045

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS09035 and ABIE40_RS09040 are separated by 76 nucleotidesABIE40_RS09040 and ABIE40_RS09045 are separated by 13 nucleotidesABIE40_RS09045 and ABIE40_RS09050 are separated by 91 nucleotides ABIE40_RS09035: ABIE40_RS09035 - dihydrolipoyl dehydrogenase, at 1,741,359 to 1,742,807 _RS09035 ABIE40_RS09040: ABIE40_RS09040 - GlsB/YeaQ/YmgE family stress response membrane protein, at 1,742,884 to 1,743,138 _RS09040 ABIE40_RS09045: ABIE40_RS09045 - GlsB/YeaQ/YmgE family stress response membrane protein, at 1,743,152 to 1,743,400 _RS09045 ABIE40_RS09050: ABIE40_RS09050 - lipoyl synthase, at 1,743,492 to 1,744,463 _RS09050 Position (kb) 1743 1744Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1742.808 kb on + strandat 1742.808 kb on + strandat 1742.809 kb on - strandat 1742.830 kb on + strandat 1742.831 kb on - strandat 1742.831 kb on - strandat 1742.831 kb on - strandat 1742.831 kb on - strandat 1743.136 kb on + strandat 1743.136 kb on + strandat 1743.137 kb on - strandat 1743.163 kb on - strandat 1743.163 kb on - strandat 1743.163 kb on - strandat 1743.163 kb on - strandat 1743.163 kb on - strandat 1743.250 kb on + strand, within ABIE40_RS09045at 1743.335 kb on + strand, within ABIE40_RS09045at 1743.335 kb on + strand, within ABIE40_RS09045at 1743.372 kb on + strand, within ABIE40_RS09045at 1743.372 kb on + strand, within ABIE40_RS09045at 1743.373 kb on - strand, within ABIE40_RS09045at 1743.373 kb on - strand, within ABIE40_RS09045at 1743.441 kb on + strandat 1743.441 kb on + strandat 1743.441 kb on + strandat 1743.441 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,742,808 + -0.7
1,742,808 + +0.3
1,742,809 - +1.3
1,742,830 + -0.4
1,742,831 - -3.3
1,742,831 - +2.3
1,742,831 - -0.3
1,742,831 - +1.2
1,743,136 + -0.0
1,743,136 + +1.3
1,743,137 - +0.2
1,743,163 - -0.1
1,743,163 - -1.6
1,743,163 - +1.9
1,743,163 - +0.6
1,743,163 - +0.2
1,743,250 + ABIE40_RS09045 0.39 +1.3
1,743,335 + ABIE40_RS09045 0.73 +1.0
1,743,335 + ABIE40_RS09045 0.73 -2.6
1,743,372 + ABIE40_RS09045 0.88 +0.5
1,743,372 + ABIE40_RS09045 0.88 +0.3
1,743,373 - ABIE40_RS09045 0.89 +0.7
1,743,373 - ABIE40_RS09045 0.89 +0.6
1,743,441 + +0.9
1,743,441 + -0.2
1,743,441 + +0.3
1,743,441 + -1.7

Or see this region's nucleotide sequence