Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04720 and ABIE40_RS04725 are separated by 156 nucleotides ABIE40_RS04725 and ABIE40_RS04730 are separated by 2 nucleotides ABIE40_RS04730 and ABIE40_RS04735 are separated by 175 nucleotides ABIE40_RS04735 and ABIE40_RS04740 are separated by 292 nucleotides ABIE40_RS04740 and ABIE40_RS04745 are separated by 83 nucleotides
ABIE40_RS04720: ABIE40_RS04720 - hypothetical protein, at 925,419 to 925,922
_RS04720
ABIE40_RS04725: ABIE40_RS04725 - type II toxin-antitoxin system VapB family antitoxin, at 926,079 to 926,321
_RS04725
ABIE40_RS04730: ABIE40_RS04730 - type II toxin-antitoxin system VapC family toxin, at 926,324 to 926,722
_RS04730
ABIE40_RS04735: ABIE40_RS04735 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 926,898 to 929,237
_RS04735
ABIE40_RS04740: ABIE40_RS04740 - hypothetical protein, at 929,530 to 929,937
_RS04740
ABIE40_RS04745: ABIE40_RS04745 - PepSY domain-containing protein, at 930,021 to 931,394
_RS04745
Position (kb) 926
927
928
929
930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 925.899 kb on + strand at 925.900 kb on - strand at 925.900 kb on - strand at 925.993 kb on + strand at 925.993 kb on + strand at 926.052 kb on - strand at 926.052 kb on - strand at 926.052 kb on - strand at 926.088 kb on + strand at 926.089 kb on - strand at 926.529 kb on + strand, within ABIE40_RS04730 at 926.529 kb on + strand, within ABIE40_RS04730 at 926.530 kb on - strand, within ABIE40_RS04730 at 926.530 kb on - strand, within ABIE40_RS04730 at 926.530 kb on - strand, within ABIE40_RS04730 at 926.580 kb on - strand, within ABIE40_RS04730 at 926.639 kb on + strand, within ABIE40_RS04730 at 926.640 kb on - strand, within ABIE40_RS04730 at 926.675 kb on + strand, within ABIE40_RS04730 at 926.675 kb on + strand, within ABIE40_RS04730 at 926.675 kb on + strand, within ABIE40_RS04730 at 926.675 kb on + strand, within ABIE40_RS04730 at 926.675 kb on + strand, within ABIE40_RS04730 at 926.676 kb on - strand, within ABIE40_RS04730 at 926.676 kb on - strand, within ABIE40_RS04730 at 926.845 kb on + strand at 926.879 kb on + strand at 926.879 kb on + strand at 926.879 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.909 kb on + strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.910 kb on - strand at 926.911 kb on + strand at 926.912 kb on - strand at 926.924 kb on - strand at 926.924 kb on - strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.977 kb on + strand at 926.999 kb on + strand at 926.999 kb on + strand at 926.999 kb on + strand at 927.001 kb on + strand at 927.001 kb on + strand at 927.001 kb on + strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.002 kb on - strand at 927.085 kb on + strand at 927.085 kb on + strand at 927.085 kb on + strand at 927.085 kb on + strand at 927.085 kb on + strand at 927.086 kb on - strand at 927.086 kb on - strand at 927.086 kb on - strand at 927.086 kb on - strand at 927.086 kb on - strand at 927.086 kb on - strand at 927.086 kb on - strand at 927.217 kb on + strand, within ABIE40_RS04735 at 927.217 kb on + strand, within ABIE40_RS04735 at 927.217 kb on + strand, within ABIE40_RS04735 at 927.257 kb on - strand, within ABIE40_RS04735 at 927.257 kb on - strand, within ABIE40_RS04735 at 927.323 kb on - strand, within ABIE40_RS04735 at 927.509 kb on - strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.760 kb on + strand, within ABIE40_RS04735 at 927.909 kb on - strand, within ABIE40_RS04735 at 927.909 kb on - strand, within ABIE40_RS04735 at 928.190 kb on - strand, within ABIE40_RS04735 at 928.190 kb on - strand, within ABIE40_RS04735 at 928.276 kb on + strand, within ABIE40_RS04735 at 928.276 kb on + strand, within ABIE40_RS04735 at 928.276 kb on + strand, within ABIE40_RS04735 at 928.384 kb on + strand, within ABIE40_RS04735 at 928.436 kb on - strand, within ABIE40_RS04735 at 928.436 kb on - strand, within ABIE40_RS04735 at 928.436 kb on - strand, within ABIE40_RS04735 at 928.436 kb on - strand, within ABIE40_RS04735 at 928.436 kb on - strand, within ABIE40_RS04735 at 928.545 kb on - strand, within ABIE40_RS04735 at 928.545 kb on - strand, within ABIE40_RS04735 at 928.562 kb on - strand, within ABIE40_RS04735 at 928.562 kb on - strand, within ABIE40_RS04735 at 928.597 kb on + strand, within ABIE40_RS04735 at 928.597 kb on + strand, within ABIE40_RS04735 at 928.597 kb on + strand, within ABIE40_RS04735 at 928.597 kb on + strand, within ABIE40_RS04735 at 928.597 kb on + strand, within ABIE40_RS04735 at 928.597 kb on + strand, within ABIE40_RS04735 at 928.732 kb on + strand, within ABIE40_RS04735 at 928.732 kb on + strand, within ABIE40_RS04735 at 928.733 kb on - strand, within ABIE40_RS04735 at 928.733 kb on - strand, within ABIE40_RS04735 at 928.900 kb on + strand, within ABIE40_RS04735 at 928.900 kb on + strand, within ABIE40_RS04735 at 928.923 kb on - strand, within ABIE40_RS04735 at 929.065 kb on + strand at 929.065 kb on + strand at 929.100 kb on + strand at 929.100 kb on + strand at 929.100 kb on + strand at 929.369 kb on + strand at 929.369 kb on + strand at 929.369 kb on + strand at 929.369 kb on + strand at 929.369 kb on + strand at 929.370 kb on - strand at 929.463 kb on - strand at 929.496 kb on - strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.529 kb on + strand at 929.530 kb on - strand at 929.530 kb on - strand at 929.530 kb on - strand at 929.530 kb on - strand at 929.530 kb on - strand at 929.530 kb on - strand at 929.536 kb on + strand at 929.536 kb on + strand at 929.536 kb on + strand at 929.536 kb on + strand at 929.536 kb on + strand at 929.537 kb on - strand at 929.537 kb on - strand at 929.537 kb on - strand at 929.576 kb on + strand, within ABIE40_RS04740 at 929.576 kb on + strand, within ABIE40_RS04740 at 929.576 kb on + strand, within ABIE40_RS04740 at 929.576 kb on + strand, within ABIE40_RS04740 at 929.576 kb on + strand, within ABIE40_RS04740 at 929.577 kb on - strand, within ABIE40_RS04740 at 929.577 kb on - strand, within ABIE40_RS04740 at 929.577 kb on - strand, within ABIE40_RS04740 at 929.577 kb on - strand, within ABIE40_RS04740 at 929.830 kb on + strand, within ABIE40_RS04740 at 929.830 kb on + strand, within ABIE40_RS04740 at 929.831 kb on - strand, within ABIE40_RS04740 at 929.835 kb on + strand, within ABIE40_RS04740 at 929.835 kb on + strand, within ABIE40_RS04740 at 929.835 kb on + strand, within ABIE40_RS04740 at 929.835 kb on + strand, within ABIE40_RS04740 at 929.835 kb on + strand, within ABIE40_RS04740 at 929.836 kb on - strand, within ABIE40_RS04740 at 929.836 kb on - strand, within ABIE40_RS04740 at 929.836 kb on - strand, within ABIE40_RS04740 at 929.836 kb on - strand, within ABIE40_RS04740 at 929.895 kb on + strand, within ABIE40_RS04740 at 929.896 kb on - strand, within ABIE40_RS04740 at 930.162 kb on + strand, within ABIE40_RS04745 at 930.162 kb on + strand, within ABIE40_RS04745 at 930.162 kb on + strand, within ABIE40_RS04745 at 930.163 kb on - strand, within ABIE40_RS04745 at 930.163 kb on - strand, within ABIE40_RS04745 at 930.163 kb on - strand, within ABIE40_RS04745 at 930.208 kb on - strand, within ABIE40_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 925,899 + -2.0 925,900 - +0.4 925,900 - -0.2 925,993 + -1.2 925,993 + +0.2 926,052 - +0.0 926,052 - -1.4 926,052 - +0.8 926,088 + -2.9 926,089 - -0.9 926,529 + ABIE40_RS04730 0.51 -0.6 926,529 + ABIE40_RS04730 0.51 +0.2 926,530 - ABIE40_RS04730 0.52 +1.1 926,530 - ABIE40_RS04730 0.52 -0.7 926,530 - ABIE40_RS04730 0.52 +1.4 926,580 - ABIE40_RS04730 0.64 -0.5 926,639 + ABIE40_RS04730 0.79 +0.2 926,640 - ABIE40_RS04730 0.79 -2.1 926,675 + ABIE40_RS04730 0.88 +0.2 926,675 + ABIE40_RS04730 0.88 +0.9 926,675 + ABIE40_RS04730 0.88 -1.4 926,675 + ABIE40_RS04730 0.88 -0.8 926,675 + ABIE40_RS04730 0.88 -0.5 926,676 - ABIE40_RS04730 0.88 +2.0 926,676 - ABIE40_RS04730 0.88 -0.1 926,845 + -0.2 926,879 + -1.5 926,879 + -0.2 926,879 + -1.9 926,909 + +1.0 926,909 + +1.3 926,909 + -1.3 926,909 + +0.2 926,909 + -0.2 926,909 + -1.6 926,909 + +1.1 926,909 + -0.0 926,909 + +1.1 926,909 + +1.9 926,909 + -3.0 926,909 + -0.3 926,910 - -2.5 926,910 - +0.7 926,910 - -1.1 926,910 - -0.1 926,910 - -0.1 926,910 - +0.3 926,910 - +0.2 926,910 - +0.5 926,910 - -0.8 926,910 - +1.5 926,910 - +0.6 926,910 - +0.0 926,911 + +1.1 926,912 - -0.4 926,924 - +0.6 926,924 - -0.4 926,977 + -0.9 926,977 + +1.1 926,977 + +0.8 926,977 + -1.3 926,977 + +0.4 926,977 + -0.0 926,977 + +0.6 926,977 + -0.7 926,977 + -0.0 926,999 + +0.2 926,999 + +0.2 926,999 + +0.4 927,001 + -0.7 927,001 + -1.8 927,001 + +0.1 927,002 - +0.5 927,002 - +0.8 927,002 - -0.1 927,002 - -0.6 927,002 - +0.0 927,002 - +0.7 927,002 - +0.6 927,002 - +0.3 927,085 + -0.6 927,085 + -0.3 927,085 + +1.3 927,085 + -2.6 927,085 + +1.8 927,086 - +1.2 927,086 - -1.6 927,086 - +1.8 927,086 - -0.3 927,086 - -1.9 927,086 - +0.2 927,086 - -0.7 927,217 + ABIE40_RS04735 0.14 +1.0 927,217 + ABIE40_RS04735 0.14 -0.7 927,217 + ABIE40_RS04735 0.14 -0.9 927,257 - ABIE40_RS04735 0.15 -0.3 927,257 - ABIE40_RS04735 0.15 -1.2 927,323 - ABIE40_RS04735 0.18 -0.6 927,509 - ABIE40_RS04735 0.26 +0.1 927,760 + ABIE40_RS04735 0.37 -0.4 927,760 + ABIE40_RS04735 0.37 +0.1 927,760 + ABIE40_RS04735 0.37 +0.6 927,760 + ABIE40_RS04735 0.37 -0.1 927,760 + ABIE40_RS04735 0.37 +0.6 927,760 + ABIE40_RS04735 0.37 +2.1 927,760 + ABIE40_RS04735 0.37 -1.4 927,760 + ABIE40_RS04735 0.37 +0.7 927,760 + ABIE40_RS04735 0.37 +0.0 927,760 + ABIE40_RS04735 0.37 -0.5 927,760 + ABIE40_RS04735 0.37 -0.7 927,760 + ABIE40_RS04735 0.37 -0.3 927,909 - ABIE40_RS04735 0.43 +1.2 927,909 - ABIE40_RS04735 0.43 -1.5 928,190 - ABIE40_RS04735 0.55 -0.5 928,190 - ABIE40_RS04735 0.55 +0.1 928,276 + ABIE40_RS04735 0.59 +0.6 928,276 + ABIE40_RS04735 0.59 -1.5 928,276 + ABIE40_RS04735 0.59 -0.9 928,384 + ABIE40_RS04735 0.64 -3.2 928,436 - ABIE40_RS04735 0.66 +0.7 928,436 - ABIE40_RS04735 0.66 +0.4 928,436 - ABIE40_RS04735 0.66 +0.9 928,436 - ABIE40_RS04735 0.66 -0.1 928,436 - ABIE40_RS04735 0.66 +0.1 928,545 - ABIE40_RS04735 0.70 -0.7 928,545 - ABIE40_RS04735 0.70 -1.0 928,562 - ABIE40_RS04735 0.71 -0.1 928,562 - ABIE40_RS04735 0.71 +0.9 928,597 + ABIE40_RS04735 0.73 -1.5 928,597 + ABIE40_RS04735 0.73 +0.1 928,597 + ABIE40_RS04735 0.73 +0.9 928,597 + ABIE40_RS04735 0.73 -1.6 928,597 + ABIE40_RS04735 0.73 -0.9 928,597 + ABIE40_RS04735 0.73 +0.2 928,732 + ABIE40_RS04735 0.78 -1.0 928,732 + ABIE40_RS04735 0.78 -0.6 928,733 - ABIE40_RS04735 0.78 -0.6 928,733 - ABIE40_RS04735 0.78 -1.1 928,900 + ABIE40_RS04735 0.86 +0.6 928,900 + ABIE40_RS04735 0.86 +1.3 928,923 - ABIE40_RS04735 0.87 -3.1 929,065 + -0.1 929,065 + +1.2 929,100 + +1.1 929,100 + +0.4 929,100 + -2.2 929,369 + -0.3 929,369 + -0.5 929,369 + +1.0 929,369 + +0.8 929,369 + -0.3 929,370 - +1.7 929,463 - +0.7 929,496 - -1.0 929,529 + -0.5 929,529 + -0.5 929,529 + -0.1 929,529 + +0.4 929,529 + +1.4 929,529 + -0.7 929,529 + -1.3 929,529 + +0.7 929,529 + -0.2 929,529 + -0.2 929,530 - +1.2 929,530 - +0.5 929,530 - -2.6 929,530 - -0.9 929,530 - +1.1 929,530 - -1.7 929,536 + +1.8 929,536 + +0.8 929,536 + -0.9 929,536 + -1.3 929,536 + -0.2 929,537 - -0.3 929,537 - +0.1 929,537 - -1.4 929,576 + ABIE40_RS04740 0.11 -1.3 929,576 + ABIE40_RS04740 0.11 +0.4 929,576 + ABIE40_RS04740 0.11 -0.4 929,576 + ABIE40_RS04740 0.11 -0.3 929,576 + ABIE40_RS04740 0.11 +0.0 929,577 - ABIE40_RS04740 0.12 +0.2 929,577 - ABIE40_RS04740 0.12 +0.7 929,577 - ABIE40_RS04740 0.12 -2.0 929,577 - ABIE40_RS04740 0.12 -0.6 929,830 + ABIE40_RS04740 0.74 +0.3 929,830 + ABIE40_RS04740 0.74 -0.1 929,831 - ABIE40_RS04740 0.74 -1.8 929,835 + ABIE40_RS04740 0.75 -2.1 929,835 + ABIE40_RS04740 0.75 +0.9 929,835 + ABIE40_RS04740 0.75 +0.8 929,835 + ABIE40_RS04740 0.75 -0.1 929,835 + ABIE40_RS04740 0.75 -1.6 929,836 - ABIE40_RS04740 0.75 -2.5 929,836 - ABIE40_RS04740 0.75 -1.0 929,836 - ABIE40_RS04740 0.75 -0.4 929,836 - ABIE40_RS04740 0.75 -0.1 929,895 + ABIE40_RS04740 0.89 +0.2 929,896 - ABIE40_RS04740 0.90 -1.0 930,162 + ABIE40_RS04745 0.10 +0.4 930,162 + ABIE40_RS04745 0.10 +1.7 930,162 + ABIE40_RS04745 0.10 -0.3 930,163 - ABIE40_RS04745 0.10 +0.5 930,163 - ABIE40_RS04745 0.10 -0.1 930,163 - ABIE40_RS04745 0.10 -0.9 930,208 - ABIE40_RS04745 0.14 +1.6
Or see this region's nucleotide sequence