Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04150 and ABIE40_RS04155 overlap by 4 nucleotides ABIE40_RS04155 and ABIE40_RS04160 are separated by 255 nucleotides ABIE40_RS04160 and ABIE40_RS04165 are separated by 5 nucleotides ABIE40_RS04165 and ABIE40_RS04170 are separated by 29 nucleotides ABIE40_RS04170 and ABIE40_RS04175 are separated by 67 nucleotides
ABIE40_RS04150: ABIE40_RS04150 - metal ABC transporter permease, at 821,836 to 822,708
_RS04150
ABIE40_RS04155: ABIE40_RS04155 - ABC transporter ATP-binding protein, at 822,705 to 823,445
_RS04155
ABIE40_RS04160: ABIE40_RS04160 - type II toxin-antitoxin system ParD family antitoxin, at 823,701 to 823,940
_RS04160
ABIE40_RS04165: ABIE40_RS04165 - type II toxin-antitoxin system RelE/ParE family toxin, at 823,946 to 824,248
_RS04165
ABIE40_RS04170: ABIE40_RS04170 - peroxiredoxin, at 824,278 to 824,763
_RS04170
ABIE40_RS04175: ABIE40_RS04175 - protein-disulfide reductase DsbD domain-containing protein, at 824,831 to 825,581
_RS04175
Position (kb) 823
824 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 822.963 kb on - strand, within ABIE40_RS04155 at 823.055 kb on + strand, within ABIE40_RS04155 at 823.055 kb on + strand, within ABIE40_RS04155 at 823.206 kb on + strand, within ABIE40_RS04155 at 823.207 kb on - strand, within ABIE40_RS04155 at 823.207 kb on - strand, within ABIE40_RS04155 at 823.352 kb on + strand, within ABIE40_RS04155 at 823.402 kb on + strand at 823.402 kb on + strand at 823.402 kb on + strand at 823.402 kb on + strand at 823.407 kb on - strand at 823.464 kb on + strand at 823.464 kb on + strand at 823.465 kb on - strand at 823.648 kb on - strand at 823.675 kb on + strand at 823.675 kb on + strand at 823.738 kb on + strand, within ABIE40_RS04160 at 823.738 kb on + strand, within ABIE40_RS04160 at 823.738 kb on + strand, within ABIE40_RS04160 at 823.739 kb on - strand, within ABIE40_RS04160 at 823.765 kb on - strand, within ABIE40_RS04160 at 823.765 kb on - strand, within ABIE40_RS04160 at 823.799 kb on + strand, within ABIE40_RS04160 at 823.799 kb on + strand, within ABIE40_RS04160 at 823.800 kb on - strand, within ABIE40_RS04160 at 823.800 kb on - strand, within ABIE40_RS04160 at 823.880 kb on - strand, within ABIE40_RS04160 at 823.895 kb on - strand, within ABIE40_RS04160 at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.938 kb on + strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.939 kb on - strand at 823.943 kb on + strand at 823.943 kb on + strand at 823.944 kb on - strand at 823.962 kb on - strand at 823.986 kb on + strand, within ABIE40_RS04165 at 823.986 kb on + strand, within ABIE40_RS04165 at 823.986 kb on + strand, within ABIE40_RS04165 at 823.986 kb on + strand, within ABIE40_RS04165 at 823.987 kb on - strand, within ABIE40_RS04165 at 823.987 kb on - strand, within ABIE40_RS04165 at 824.003 kb on + strand, within ABIE40_RS04165 at 824.003 kb on + strand, within ABIE40_RS04165 at 824.004 kb on - strand, within ABIE40_RS04165 at 824.043 kb on + strand, within ABIE40_RS04165 at 824.043 kb on + strand, within ABIE40_RS04165 at 824.044 kb on - strand, within ABIE40_RS04165 at 824.068 kb on + strand, within ABIE40_RS04165 at 824.068 kb on + strand, within ABIE40_RS04165 at 824.069 kb on - strand, within ABIE40_RS04165 at 824.069 kb on - strand, within ABIE40_RS04165 at 824.069 kb on - strand, within ABIE40_RS04165 at 824.069 kb on - strand, within ABIE40_RS04165 at 824.069 kb on - strand, within ABIE40_RS04165 at 824.069 kb on - strand, within ABIE40_RS04165 at 824.128 kb on + strand, within ABIE40_RS04165 at 824.128 kb on + strand, within ABIE40_RS04165 at 824.128 kb on + strand, within ABIE40_RS04165 at 824.140 kb on + strand, within ABIE40_RS04165 at 824.141 kb on - strand, within ABIE40_RS04165 at 824.141 kb on - strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.153 kb on + strand, within ABIE40_RS04165 at 824.154 kb on - strand, within ABIE40_RS04165 at 824.154 kb on - strand, within ABIE40_RS04165 at 824.154 kb on - strand, within ABIE40_RS04165 at 824.154 kb on - strand, within ABIE40_RS04165 at 824.154 kb on - strand, within ABIE40_RS04165 at 824.154 kb on - strand, within ABIE40_RS04165 at 824.238 kb on + strand at 824.238 kb on + strand at 824.238 kb on + strand at 824.239 kb on - strand at 824.239 kb on - strand at 824.239 kb on - strand at 824.382 kb on - strand, within ABIE40_RS04170 at 824.595 kb on - strand, within ABIE40_RS04170 at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.819 kb on + strand at 824.820 kb on - strand at 824.820 kb on - strand at 824.820 kb on - strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.821 kb on + strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.822 kb on - strand at 824.910 kb on + strand, within ABIE40_RS04175 at 824.910 kb on + strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175 at 824.911 kb on - strand, within ABIE40_RS04175
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 822,963 - ABIE40_RS04155 0.35 -0.0 823,055 + ABIE40_RS04155 0.47 -0.4 823,055 + ABIE40_RS04155 0.47 -0.3 823,206 + ABIE40_RS04155 0.68 -0.7 823,207 - ABIE40_RS04155 0.68 -1.0 823,207 - ABIE40_RS04155 0.68 +0.1 823,352 + ABIE40_RS04155 0.87 +0.8 823,402 + -1.0 823,402 + -0.4 823,402 + +0.9 823,402 + -0.0 823,407 - +0.2 823,464 + +0.9 823,464 + -0.1 823,465 - -0.3 823,648 - -0.6 823,675 + +0.7 823,675 + -0.1 823,738 + ABIE40_RS04160 0.15 +0.9 823,738 + ABIE40_RS04160 0.15 -2.7 823,738 + ABIE40_RS04160 0.15 -5.2 823,739 - ABIE40_RS04160 0.16 -0.6 823,765 - ABIE40_RS04160 0.27 -2.5 823,765 - ABIE40_RS04160 0.27 -2.0 823,799 + ABIE40_RS04160 0.41 -1.3 823,799 + ABIE40_RS04160 0.41 -1.1 823,800 - ABIE40_RS04160 0.41 -0.3 823,800 - ABIE40_RS04160 0.41 -0.6 823,880 - ABIE40_RS04160 0.75 -1.1 823,895 - ABIE40_RS04160 0.81 -0.9 823,938 + +1.0 823,938 + -0.2 823,938 + -1.1 823,938 + -0.7 823,938 + +0.3 823,938 + +0.2 823,938 + +0.2 823,938 + +0.3 823,938 + -0.6 823,938 + -1.1 823,938 + +0.3 823,938 + -2.1 823,938 + -0.1 823,938 + +1.3 823,938 + -0.5 823,939 - +0.2 823,939 - -0.7 823,939 - -3.0 823,939 - +2.5 823,939 - +0.7 823,939 - -0.5 823,939 - -0.3 823,939 - -0.9 823,943 + -0.2 823,943 + +0.6 823,944 - -0.5 823,962 - +0.1 823,986 + ABIE40_RS04165 0.13 +0.5 823,986 + ABIE40_RS04165 0.13 +0.2 823,986 + ABIE40_RS04165 0.13 +0.2 823,986 + ABIE40_RS04165 0.13 +0.5 823,987 - ABIE40_RS04165 0.14 -0.1 823,987 - ABIE40_RS04165 0.14 -1.1 824,003 + ABIE40_RS04165 0.19 -0.7 824,003 + ABIE40_RS04165 0.19 +0.7 824,004 - ABIE40_RS04165 0.19 +3.5 824,043 + ABIE40_RS04165 0.32 -0.3 824,043 + ABIE40_RS04165 0.32 +0.8 824,044 - ABIE40_RS04165 0.32 +0.5 824,068 + ABIE40_RS04165 0.40 +0.3 824,068 + ABIE40_RS04165 0.40 -0.2 824,069 - ABIE40_RS04165 0.41 +0.7 824,069 - ABIE40_RS04165 0.41 +2.4 824,069 - ABIE40_RS04165 0.41 -0.4 824,069 - ABIE40_RS04165 0.41 +1.0 824,069 - ABIE40_RS04165 0.41 +1.7 824,069 - ABIE40_RS04165 0.41 -1.3 824,128 + ABIE40_RS04165 0.60 -0.4 824,128 + ABIE40_RS04165 0.60 +0.2 824,128 + ABIE40_RS04165 0.60 -0.2 824,140 + ABIE40_RS04165 0.64 -0.1 824,141 - ABIE40_RS04165 0.64 +0.8 824,141 - ABIE40_RS04165 0.64 +0.7 824,153 + ABIE40_RS04165 0.68 +2.6 824,153 + ABIE40_RS04165 0.68 +1.1 824,153 + ABIE40_RS04165 0.68 -0.7 824,153 + ABIE40_RS04165 0.68 -0.8 824,153 + ABIE40_RS04165 0.68 -0.0 824,153 + ABIE40_RS04165 0.68 +0.0 824,153 + ABIE40_RS04165 0.68 -0.3 824,153 + ABIE40_RS04165 0.68 -1.3 824,153 + ABIE40_RS04165 0.68 +0.4 824,153 + ABIE40_RS04165 0.68 +0.0 824,154 - ABIE40_RS04165 0.69 -2.6 824,154 - ABIE40_RS04165 0.69 -0.3 824,154 - ABIE40_RS04165 0.69 +0.0 824,154 - ABIE40_RS04165 0.69 -2.2 824,154 - ABIE40_RS04165 0.69 +0.2 824,154 - ABIE40_RS04165 0.69 +0.9 824,238 + +0.1 824,238 + +0.4 824,238 + -0.5 824,239 - -0.8 824,239 - -0.2 824,239 - -0.1 824,382 - ABIE40_RS04170 0.21 +0.1 824,595 - ABIE40_RS04170 0.65 -0.3 824,819 + -0.3 824,819 + -1.5 824,819 + -0.7 824,819 + +1.0 824,819 + +2.3 824,819 + +0.2 824,819 + -1.7 824,820 - -1.4 824,820 - -1.3 824,820 - -0.3 824,821 + +0.1 824,821 + -1.8 824,821 + +0.6 824,821 + +1.7 824,821 + -0.7 824,821 + -0.3 824,821 + +1.2 824,821 + +0.1 824,822 - +0.9 824,822 - +0.4 824,822 - -0.1 824,822 - +1.0 824,822 - -1.5 824,822 - +0.8 824,910 + ABIE40_RS04175 0.11 +0.4 824,910 + ABIE40_RS04175 0.11 +1.8 824,911 - ABIE40_RS04175 0.11 -0.1 824,911 - ABIE40_RS04175 0.11 -0.9 824,911 - ABIE40_RS04175 0.11 -1.8 824,911 - ABIE40_RS04175 0.11 +1.9 824,911 - ABIE40_RS04175 0.11 -0.0
Or see this region's nucleotide sequence