Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03740 and ABIE40_RS03745 are separated by 140 nucleotides ABIE40_RS03745 and ABIE40_RS03750 are separated by 8 nucleotides ABIE40_RS03750 and ABIE40_RS03755 overlap by 4 nucleotides ABIE40_RS03755 and ABIE40_RS03760 are separated by 91 nucleotides
ABIE40_RS03740: ABIE40_RS03740 - isoleucine--tRNA ligase, at 737,479 to 740,379
_RS03740
ABIE40_RS03745: ABIE40_RS03745 - hypothetical protein, at 740,520 to 741,149
_RS03745
ABIE40_RS03750: ABIE40_RS03750 - hypothetical protein, at 741,158 to 741,451
_RS03750
ABIE40_RS03755: ABIE40_RS03755 - nucleoside deaminase, at 741,448 to 741,885
_RS03755
ABIE40_RS03760: ABIE40_RS03760 - pseudouridine synthase, at 741,977 to 743,995
_RS03760
Position (kb) 741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 740.377 kb on + strand at 740.378 kb on - strand at 740.874 kb on + strand, within ABIE40_RS03745 at 740.874 kb on + strand, within ABIE40_RS03745 at 740.874 kb on + strand, within ABIE40_RS03745 at 740.874 kb on + strand, within ABIE40_RS03745 at 740.874 kb on + strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 740.875 kb on - strand, within ABIE40_RS03745 at 741.147 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.159 kb on + strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.160 kb on - strand at 741.382 kb on + strand, within ABIE40_RS03750 at 741.382 kb on + strand, within ABIE40_RS03750 at 741.383 kb on - strand, within ABIE40_RS03750 at 741.383 kb on - strand, within ABIE40_RS03750 at 741.383 kb on - strand, within ABIE40_RS03750 at 741.403 kb on - strand, within ABIE40_RS03750 at 741.403 kb on - strand, within ABIE40_RS03750 at 741.945 kb on + strand at 741.946 kb on - strand at 741.946 kb on - strand at 741.946 kb on - strand at 741.946 kb on - strand at 742.030 kb on + strand at 742.030 kb on + strand at 742.030 kb on + strand at 742.031 kb on - strand at 742.031 kb on - strand at 742.366 kb on - strand, within ABIE40_RS03760 at 742.427 kb on - strand, within ABIE40_RS03760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 740,377 + -0.1 740,378 - +0.3 740,874 + ABIE40_RS03745 0.56 +0.2 740,874 + ABIE40_RS03745 0.56 -0.6 740,874 + ABIE40_RS03745 0.56 -0.3 740,874 + ABIE40_RS03745 0.56 +0.2 740,874 + ABIE40_RS03745 0.56 +1.0 740,875 - ABIE40_RS03745 0.56 -1.3 740,875 - ABIE40_RS03745 0.56 +0.1 740,875 - ABIE40_RS03745 0.56 +0.8 740,875 - ABIE40_RS03745 0.56 +0.4 740,875 - ABIE40_RS03745 0.56 +0.9 740,875 - ABIE40_RS03745 0.56 +0.7 740,875 - ABIE40_RS03745 0.56 -1.3 740,875 - ABIE40_RS03745 0.56 +1.2 741,147 + -0.5 741,159 + +0.8 741,159 + -1.2 741,159 + +0.1 741,159 + +1.4 741,159 + -0.5 741,159 + -0.7 741,159 + +1.4 741,159 + +1.7 741,159 + +1.7 741,159 + -1.3 741,159 + +0.7 741,159 + +0.2 741,159 + +0.7 741,160 - +1.9 741,160 - +0.1 741,160 - +0.4 741,160 - +0.4 741,160 - +0.8 741,160 - +1.2 741,160 - +0.4 741,160 - -2.1 741,160 - +0.6 741,160 - +0.4 741,382 + ABIE40_RS03750 0.76 +1.5 741,382 + ABIE40_RS03750 0.76 +1.1 741,383 - ABIE40_RS03750 0.77 -2.0 741,383 - ABIE40_RS03750 0.77 -0.3 741,383 - ABIE40_RS03750 0.77 +0.7 741,403 - ABIE40_RS03750 0.83 +1.7 741,403 - ABIE40_RS03750 0.83 +0.0 741,945 + +0.5 741,946 - +0.1 741,946 - +1.5 741,946 - -0.1 741,946 - -0.5 742,030 + +0.1 742,030 + +0.7 742,030 + -0.3 742,031 - +0.2 742,031 - +1.8 742,366 - ABIE40_RS03760 0.19 -0.2 742,427 - ABIE40_RS03760 0.22 -0.6
Or see this region's nucleotide sequence