Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01975 and ABIE40_RS01980 overlap by 4 nucleotides ABIE40_RS01980 and ABIE40_RS01985 are separated by 109 nucleotides ABIE40_RS01985 and ABIE40_RS01990 are separated by 49 nucleotides ABIE40_RS01990 and ABIE40_RS01995 are separated by 130 nucleotides
ABIE40_RS01975: ABIE40_RS01975 - sigma-70 family RNA polymerase sigma factor, at 389,185 to 389,724
_RS01975
ABIE40_RS01980: ABIE40_RS01980 - anti-sigma factor, at 389,721 to 390,440
_RS01980
ABIE40_RS01985: ABIE40_RS01985 - fasciclin domain-containing protein, at 390,550 to 391,107
_RS01985
ABIE40_RS01990: ABIE40_RS01990 - ribosome biogenesis GTP-binding protein YihA/YsxC, at 391,157 to 391,813
_RS01990
ABIE40_RS01995: ABIE40_RS01995 - membrane protein insertase YidC, at 391,944 to 393,735
_RS01995
Position (kb) 390
391
392 Strain fitness (log2 ratio) -2
-1
0
1
2 at 389.599 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.609 kb on - strand, within ABIE40_RS01975 at 389.626 kb on + strand, within ABIE40_RS01975 at 389.626 kb on + strand, within ABIE40_RS01975 at 389.781 kb on + strand at 389.781 kb on + strand at 389.781 kb on + strand at 389.781 kb on + strand at 389.782 kb on - strand at 389.782 kb on - strand at 389.803 kb on - strand, within ABIE40_RS01980 at 389.803 kb on - strand, within ABIE40_RS01980 at 389.904 kb on + strand, within ABIE40_RS01980 at 389.904 kb on + strand, within ABIE40_RS01980 at 389.904 kb on + strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 389.905 kb on - strand, within ABIE40_RS01980 at 390.162 kb on + strand, within ABIE40_RS01980 at 390.163 kb on - strand, within ABIE40_RS01980 at 390.174 kb on - strand, within ABIE40_RS01980 at 390.174 kb on - strand, within ABIE40_RS01980 at 390.174 kb on - strand, within ABIE40_RS01980 at 390.174 kb on - strand, within ABIE40_RS01980 at 390.320 kb on + strand, within ABIE40_RS01980 at 390.320 kb on + strand, within ABIE40_RS01980 at 390.320 kb on + strand, within ABIE40_RS01980 at 390.320 kb on + strand, within ABIE40_RS01980 at 390.321 kb on - strand, within ABIE40_RS01980 at 390.438 kb on + strand at 390.439 kb on - strand at 390.482 kb on + strand at 390.482 kb on + strand at 390.483 kb on - strand at 390.483 kb on - strand at 390.524 kb on - strand at 390.564 kb on + strand at 390.565 kb on - strand at 390.565 kb on - strand at 390.652 kb on + strand, within ABIE40_RS01985 at 390.652 kb on + strand, within ABIE40_RS01985 at 390.666 kb on + strand, within ABIE40_RS01985 at 390.770 kb on + strand, within ABIE40_RS01985 at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.105 kb on + strand at 391.106 kb on - strand at 391.106 kb on - strand at 391.106 kb on - strand at 391.106 kb on - strand at 391.106 kb on - strand at 391.106 kb on - strand at 391.830 kb on - strand at 391.848 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 389,599 - ABIE40_RS01975 0.77 +0.6 389,609 - ABIE40_RS01975 0.79 +0.4 389,609 - ABIE40_RS01975 0.79 -0.1 389,609 - ABIE40_RS01975 0.79 +0.5 389,609 - ABIE40_RS01975 0.79 -0.4 389,626 + ABIE40_RS01975 0.82 -1.2 389,626 + ABIE40_RS01975 0.82 -0.6 389,781 + -1.1 389,781 + +0.5 389,781 + -0.0 389,781 + +0.8 389,782 - -1.5 389,782 - +0.6 389,803 - ABIE40_RS01980 0.11 -1.4 389,803 - ABIE40_RS01980 0.11 +0.2 389,904 + ABIE40_RS01980 0.25 -0.1 389,904 + ABIE40_RS01980 0.25 +0.4 389,904 + ABIE40_RS01980 0.25 -2.0 389,905 - ABIE40_RS01980 0.26 -0.1 389,905 - ABIE40_RS01980 0.26 +0.6 389,905 - ABIE40_RS01980 0.26 -0.1 389,905 - ABIE40_RS01980 0.26 +0.9 389,905 - ABIE40_RS01980 0.26 +1.7 390,162 + ABIE40_RS01980 0.61 +0.2 390,163 - ABIE40_RS01980 0.61 +2.6 390,174 - ABIE40_RS01980 0.63 -0.0 390,174 - ABIE40_RS01980 0.63 -0.8 390,174 - ABIE40_RS01980 0.63 -2.5 390,174 - ABIE40_RS01980 0.63 +1.1 390,320 + ABIE40_RS01980 0.83 +0.3 390,320 + ABIE40_RS01980 0.83 -1.8 390,320 + ABIE40_RS01980 0.83 +1.2 390,320 + ABIE40_RS01980 0.83 +1.3 390,321 - ABIE40_RS01980 0.83 -1.0 390,438 + +0.6 390,439 - -0.9 390,482 + +0.8 390,482 + +1.0 390,483 - -2.5 390,483 - -0.1 390,524 - -0.8 390,564 + -1.3 390,565 - +0.6 390,565 - +0.6 390,652 + ABIE40_RS01985 0.18 -0.3 390,652 + ABIE40_RS01985 0.18 +0.2 390,666 + ABIE40_RS01985 0.21 -2.2 390,770 + ABIE40_RS01985 0.39 -2.2 391,105 + +0.5 391,105 + +0.4 391,105 + +0.1 391,105 + -0.3 391,105 + -0.4 391,105 + -0.1 391,105 + -0.3 391,105 + -1.1 391,105 + +0.2 391,105 + -1.0 391,105 + -0.8 391,106 - +1.4 391,106 - -1.5 391,106 - -0.3 391,106 - -0.7 391,106 - +0.3 391,106 - +0.5 391,830 - -0.4 391,848 - +0.6
Or see this region's nucleotide sequence