Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00985

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00975 and ABIE40_RS00980 are separated by 65 nucleotidesABIE40_RS00980 and ABIE40_RS00985 are separated by 0 nucleotidesABIE40_RS00985 and ABIE40_RS00990 are separated by 58 nucleotidesABIE40_RS00990 and ABIE40_RS00995 are separated by 8 nucleotides ABIE40_RS00975: ABIE40_RS00975 - GumC family protein, at 202,809 to 204,413 _RS00975 ABIE40_RS00980: ABIE40_RS00980 - hypothetical protein, at 204,479 to 204,811 _RS00980 ABIE40_RS00985: ABIE40_RS00985 - DoxX family protein, at 204,812 to 205,228 _RS00985 ABIE40_RS00990: ABIE40_RS00990 - DNA-binding domain-containing protein, at 205,287 to 206,060 _RS00990 ABIE40_RS00995: ABIE40_RS00995 - DUF692 domain-containing protein, at 206,069 to 206,923 _RS00995 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 203.886 kb on + strand, within ABIE40_RS00975at 203.886 kb on + strand, within ABIE40_RS00975at 203.886 kb on + strand, within ABIE40_RS00975at 203.887 kb on - strand, within ABIE40_RS00975at 203.917 kb on + strand, within ABIE40_RS00975at 203.918 kb on - strand, within ABIE40_RS00975at 203.918 kb on - strand, within ABIE40_RS00975at 203.918 kb on - strand, within ABIE40_RS00975at 203.918 kb on - strand, within ABIE40_RS00975at 204.037 kb on - strand, within ABIE40_RS00975at 204.037 kb on - strand, within ABIE40_RS00975at 204.037 kb on - strand, within ABIE40_RS00975at 204.084 kb on - strand, within ABIE40_RS00975at 204.171 kb on + strand, within ABIE40_RS00975at 204.171 kb on + strand, within ABIE40_RS00975at 204.171 kb on + strand, within ABIE40_RS00975at 204.172 kb on - strand, within ABIE40_RS00975at 204.172 kb on - strand, within ABIE40_RS00975at 204.172 kb on - strand, within ABIE40_RS00975at 204.231 kb on - strand, within ABIE40_RS00975at 204.231 kb on - strand, within ABIE40_RS00975at 204.233 kb on + strand, within ABIE40_RS00975at 204.233 kb on + strand, within ABIE40_RS00975at 204.233 kb on + strand, within ABIE40_RS00975at 204.234 kb on - strand, within ABIE40_RS00975at 204.234 kb on - strand, within ABIE40_RS00975at 204.234 kb on - strand, within ABIE40_RS00975at 204.265 kb on + strandat 204.433 kb on + strandat 204.433 kb on + strandat 204.433 kb on + strandat 204.433 kb on + strandat 204.434 kb on - strandat 204.434 kb on - strandat 204.434 kb on - strandat 204.434 kb on - strandat 204.434 kb on - strandat 204.593 kb on + strand, within ABIE40_RS00980at 204.594 kb on - strand, within ABIE40_RS00980at 204.599 kb on + strand, within ABIE40_RS00980at 204.599 kb on + strand, within ABIE40_RS00980at 204.599 kb on + strand, within ABIE40_RS00980at 204.599 kb on + strand, within ABIE40_RS00980at 204.599 kb on + strand, within ABIE40_RS00980at 204.600 kb on - strand, within ABIE40_RS00980at 204.600 kb on - strand, within ABIE40_RS00980at 204.600 kb on - strand, within ABIE40_RS00980at 204.602 kb on - strand, within ABIE40_RS00980at 204.653 kb on + strand, within ABIE40_RS00980at 204.653 kb on + strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.654 kb on - strand, within ABIE40_RS00980at 204.734 kb on + strand, within ABIE40_RS00980at 204.735 kb on - strand, within ABIE40_RS00980at 204.735 kb on - strand, within ABIE40_RS00980at 204.735 kb on - strand, within ABIE40_RS00980at 204.831 kb on + strandat 204.831 kb on + strandat 204.885 kb on - strand, within ABIE40_RS00985at 204.933 kb on + strand, within ABIE40_RS00985at 205.083 kb on + strand, within ABIE40_RS00985at 205.084 kb on - strand, within ABIE40_RS00985at 205.084 kb on - strand, within ABIE40_RS00985at 205.101 kb on + strand, within ABIE40_RS00985at 205.101 kb on + strand, within ABIE40_RS00985at 205.102 kb on - strand, within ABIE40_RS00985at 205.102 kb on - strand, within ABIE40_RS00985at 205.282 kb on + strandat 205.282 kb on + strandat 205.283 kb on - strandat 205.283 kb on - strandat 205.467 kb on + strand, within ABIE40_RS00990at 205.468 kb on - strand, within ABIE40_RS00990at 205.563 kb on + strand, within ABIE40_RS00990at 205.564 kb on - strand, within ABIE40_RS00990at 205.697 kb on - strand, within ABIE40_RS00990at 205.697 kb on - strand, within ABIE40_RS00990at 205.741 kb on + strand, within ABIE40_RS00990at 205.798 kb on + strand, within ABIE40_RS00990at 205.798 kb on + strand, within ABIE40_RS00990at 205.799 kb on - strand, within ABIE40_RS00990at 205.799 kb on - strand, within ABIE40_RS00990at 205.799 kb on - strand, within ABIE40_RS00990at 205.838 kb on + strand, within ABIE40_RS00990at 205.838 kb on + strand, within ABIE40_RS00990at 205.838 kb on + strand, within ABIE40_RS00990at 205.838 kb on + strand, within ABIE40_RS00990at 205.839 kb on - strand, within ABIE40_RS00990at 205.846 kb on + strand, within ABIE40_RS00990at 205.846 kb on + strand, within ABIE40_RS00990at 205.846 kb on + strand, within ABIE40_RS00990at 205.847 kb on - strand, within ABIE40_RS00990at 205.946 kb on - strand, within ABIE40_RS00990at 206.055 kb on - strandat 206.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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203,886 + ABIE40_RS00975 0.67 +1.0
203,886 + ABIE40_RS00975 0.67 -0.6
203,886 + ABIE40_RS00975 0.67 -1.6
203,887 - ABIE40_RS00975 0.67 -0.2
203,917 + ABIE40_RS00975 0.69 +0.4
203,918 - ABIE40_RS00975 0.69 -1.0
203,918 - ABIE40_RS00975 0.69 -2.2
203,918 - ABIE40_RS00975 0.69 +0.0
203,918 - ABIE40_RS00975 0.69 -0.2
204,037 - ABIE40_RS00975 0.77 -0.1
204,037 - ABIE40_RS00975 0.77 +0.6
204,037 - ABIE40_RS00975 0.77 -1.9
204,084 - ABIE40_RS00975 0.79 +0.2
204,171 + ABIE40_RS00975 0.85 +0.7
204,171 + ABIE40_RS00975 0.85 +0.5
204,171 + ABIE40_RS00975 0.85 -0.5
204,172 - ABIE40_RS00975 0.85 +0.9
204,172 - ABIE40_RS00975 0.85 +1.2
204,172 - ABIE40_RS00975 0.85 -0.4
204,231 - ABIE40_RS00975 0.89 -1.1
204,231 - ABIE40_RS00975 0.89 +2.0
204,233 + ABIE40_RS00975 0.89 +0.1
204,233 + ABIE40_RS00975 0.89 -0.6
204,233 + ABIE40_RS00975 0.89 +0.3
204,234 - ABIE40_RS00975 0.89 -0.5
204,234 - ABIE40_RS00975 0.89 -1.1
204,234 - ABIE40_RS00975 0.89 +4.2
204,265 + -1.3
204,433 + +2.0
204,433 + +1.5
204,433 + -0.5
204,433 + +0.9
204,434 - -0.1
204,434 - +0.4
204,434 - -0.9
204,434 - -0.1
204,434 - +0.7
204,593 + ABIE40_RS00980 0.34 +0.2
204,594 - ABIE40_RS00980 0.35 +0.7
204,599 + ABIE40_RS00980 0.36 +0.2
204,599 + ABIE40_RS00980 0.36 -0.5
204,599 + ABIE40_RS00980 0.36 +1.3
204,599 + ABIE40_RS00980 0.36 -1.3
204,599 + ABIE40_RS00980 0.36 +0.3
204,600 - ABIE40_RS00980 0.36 -0.7
204,600 - ABIE40_RS00980 0.36 -0.5
204,600 - ABIE40_RS00980 0.36 +1.7
204,602 - ABIE40_RS00980 0.37 -0.3
204,653 + ABIE40_RS00980 0.52 -0.6
204,653 + ABIE40_RS00980 0.52 -0.2
204,654 - ABIE40_RS00980 0.53 +1.1
204,654 - ABIE40_RS00980 0.53 +1.1
204,654 - ABIE40_RS00980 0.53 +0.9
204,654 - ABIE40_RS00980 0.53 -1.7
204,654 - ABIE40_RS00980 0.53 +0.1
204,654 - ABIE40_RS00980 0.53 -0.1
204,654 - ABIE40_RS00980 0.53 -0.4
204,654 - ABIE40_RS00980 0.53 +0.5
204,734 + ABIE40_RS00980 0.77 -0.8
204,735 - ABIE40_RS00980 0.77 -0.2
204,735 - ABIE40_RS00980 0.77 +0.2
204,735 - ABIE40_RS00980 0.77 +0.2
204,831 + -1.0
204,831 + -1.1
204,885 - ABIE40_RS00985 0.18 +0.8
204,933 + ABIE40_RS00985 0.29 +2.0
205,083 + ABIE40_RS00985 0.65 -1.1
205,084 - ABIE40_RS00985 0.65 +0.1
205,084 - ABIE40_RS00985 0.65 +0.8
205,101 + ABIE40_RS00985 0.69 -1.8
205,101 + ABIE40_RS00985 0.69 +1.4
205,102 - ABIE40_RS00985 0.70 -0.4
205,102 - ABIE40_RS00985 0.70 +3.4
205,282 + -0.0
205,282 + -2.8
205,283 - -0.0
205,283 - -0.7
205,467 + ABIE40_RS00990 0.23 -0.8
205,468 - ABIE40_RS00990 0.23 -0.2
205,563 + ABIE40_RS00990 0.36 +0.4
205,564 - ABIE40_RS00990 0.36 -1.2
205,697 - ABIE40_RS00990 0.53 +1.6
205,697 - ABIE40_RS00990 0.53 -0.6
205,741 + ABIE40_RS00990 0.59 +0.6
205,798 + ABIE40_RS00990 0.66 +0.1
205,798 + ABIE40_RS00990 0.66 +0.5
205,799 - ABIE40_RS00990 0.66 -0.3
205,799 - ABIE40_RS00990 0.66 -0.1
205,799 - ABIE40_RS00990 0.66 -0.1
205,838 + ABIE40_RS00990 0.71 -0.1
205,838 + ABIE40_RS00990 0.71 +2.8
205,838 + ABIE40_RS00990 0.71 -1.4
205,838 + ABIE40_RS00990 0.71 +0.0
205,839 - ABIE40_RS00990 0.71 -0.8
205,846 + ABIE40_RS00990 0.72 -0.7
205,846 + ABIE40_RS00990 0.72 -2.9
205,846 + ABIE40_RS00990 0.72 +0.4
205,847 - ABIE40_RS00990 0.72 +0.1
205,946 - ABIE40_RS00990 0.85 -0.1
206,055 - +1.2
206,055 - -0.6

Or see this region's nucleotide sequence