Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00620

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00615 and ABIE40_RS00620 are separated by 151 nucleotidesABIE40_RS00620 and ABIE40_RS00625 overlap by 1 nucleotides ABIE40_RS00615: ABIE40_RS00615 - extracellular solute-binding protein, at 125,807 to 127,642 _RS00615 ABIE40_RS00620: ABIE40_RS00620 - microcin C ABC transporter permease YejB, at 127,794 to 128,882 _RS00620 ABIE40_RS00625: ABIE40_RS00625 - ABC transporter permease, at 128,882 to 130,030 _RS00625 Position (kb) 127 128 129Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 126.828 kb on + strand, within ABIE40_RS00615at 126.829 kb on - strand, within ABIE40_RS00615at 126.845 kb on + strand, within ABIE40_RS00615at 126.845 kb on + strand, within ABIE40_RS00615at 126.846 kb on - strand, within ABIE40_RS00615at 126.893 kb on + strand, within ABIE40_RS00615at 126.893 kb on + strand, within ABIE40_RS00615at 126.893 kb on + strand, within ABIE40_RS00615at 126.893 kb on + strand, within ABIE40_RS00615at 126.893 kb on + strand, within ABIE40_RS00615at 126.911 kb on + strand, within ABIE40_RS00615at 126.912 kb on - strand, within ABIE40_RS00615at 127.005 kb on + strand, within ABIE40_RS00615at 127.005 kb on + strand, within ABIE40_RS00615at 127.006 kb on - strand, within ABIE40_RS00615at 127.019 kb on + strand, within ABIE40_RS00615at 127.020 kb on - strand, within ABIE40_RS00615at 127.021 kb on + strand, within ABIE40_RS00615at 127.022 kb on - strand, within ABIE40_RS00615at 127.022 kb on - strand, within ABIE40_RS00615at 127.022 kb on - strand, within ABIE40_RS00615at 127.087 kb on - strand, within ABIE40_RS00615at 127.161 kb on + strand, within ABIE40_RS00615at 127.162 kb on - strand, within ABIE40_RS00615at 127.162 kb on - strand, within ABIE40_RS00615at 127.202 kb on + strand, within ABIE40_RS00615at 127.203 kb on - strand, within ABIE40_RS00615at 127.210 kb on + strand, within ABIE40_RS00615at 127.211 kb on - strand, within ABIE40_RS00615at 127.266 kb on - strand, within ABIE40_RS00615at 127.267 kb on + strand, within ABIE40_RS00615at 127.267 kb on + strand, within ABIE40_RS00615at 127.267 kb on + strand, within ABIE40_RS00615at 127.267 kb on + strand, within ABIE40_RS00615at 127.267 kb on + strand, within ABIE40_RS00615at 127.268 kb on - strand, within ABIE40_RS00615at 127.268 kb on - strand, within ABIE40_RS00615at 127.268 kb on - strand, within ABIE40_RS00615at 127.292 kb on + strand, within ABIE40_RS00615at 127.293 kb on - strand, within ABIE40_RS00615at 127.352 kb on + strand, within ABIE40_RS00615at 127.352 kb on + strand, within ABIE40_RS00615at 127.394 kb on + strand, within ABIE40_RS00615at 127.500 kb on + strandat 127.501 kb on - strandat 127.514 kb on + strandat 127.514 kb on + strandat 127.514 kb on + strandat 127.514 kb on + strandat 127.515 kb on - strandat 127.515 kb on - strandat 127.595 kb on + strandat 127.640 kb on + strandat 127.803 kb on + strandat 127.803 kb on + strandat 127.803 kb on + strandat 127.803 kb on + strandat 127.803 kb on + strandat 127.803 kb on + strandat 127.803 kb on + strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.804 kb on - strandat 127.805 kb on + strandat 128.005 kb on - strand, within ABIE40_RS00620at 128.005 kb on - strand, within ABIE40_RS00620at 128.109 kb on + strand, within ABIE40_RS00620at 128.110 kb on - strand, within ABIE40_RS00620at 128.110 kb on - strand, within ABIE40_RS00620at 128.110 kb on - strand, within ABIE40_RS00620at 128.174 kb on + strand, within ABIE40_RS00620at 128.174 kb on + strand, within ABIE40_RS00620at 128.174 kb on + strand, within ABIE40_RS00620at 128.175 kb on - strand, within ABIE40_RS00620at 128.223 kb on + strand, within ABIE40_RS00620at 128.223 kb on + strand, within ABIE40_RS00620at 128.223 kb on + strand, within ABIE40_RS00620at 128.223 kb on + strand, within ABIE40_RS00620at 128.376 kb on + strand, within ABIE40_RS00620at 128.376 kb on + strand, within ABIE40_RS00620at 128.376 kb on + strand, within ABIE40_RS00620at 128.376 kb on + strand, within ABIE40_RS00620at 128.376 kb on + strand, within ABIE40_RS00620at 128.377 kb on - strand, within ABIE40_RS00620at 128.377 kb on - strand, within ABIE40_RS00620at 128.377 kb on - strand, within ABIE40_RS00620at 128.377 kb on - strand, within ABIE40_RS00620at 128.377 kb on - strand, within ABIE40_RS00620at 128.556 kb on + strand, within ABIE40_RS00620at 128.557 kb on - strand, within ABIE40_RS00620at 128.557 kb on - strand, within ABIE40_RS00620at 128.557 kb on - strand, within ABIE40_RS00620at 128.557 kb on - strand, within ABIE40_RS00620at 128.557 kb on - strand, within ABIE40_RS00620at 128.557 kb on - strand, within ABIE40_RS00620at 128.604 kb on + strand, within ABIE40_RS00620at 128.605 kb on - strand, within ABIE40_RS00620at 128.605 kb on - strand, within ABIE40_RS00620at 128.605 kb on - strand, within ABIE40_RS00620at 128.615 kb on - strand, within ABIE40_RS00620at 128.615 kb on - strand, within ABIE40_RS00620at 128.615 kb on - strand, within ABIE40_RS00620at 128.736 kb on + strand, within ABIE40_RS00620at 128.784 kb on + strandat 128.784 kb on + strandat 128.784 kb on + strandat 128.784 kb on + strandat 128.785 kb on - strandat 128.785 kb on - strandat 128.786 kb on + strandat 128.786 kb on + strandat 128.786 kb on + strandat 128.786 kb on + strandat 128.787 kb on - strandat 128.787 kb on - strandat 128.787 kb on - strandat 128.787 kb on - strandat 128.787 kb on - strandat 128.835 kb on + strandat 128.835 kb on + strandat 128.836 kb on - strandat 128.836 kb on - strandat 128.836 kb on - strandat 128.976 kb on + strandat 129.083 kb on + strand, within ABIE40_RS00625at 129.083 kb on + strand, within ABIE40_RS00625at 129.083 kb on + strand, within ABIE40_RS00625at 129.084 kb on - strand, within ABIE40_RS00625at 129.119 kb on + strand, within ABIE40_RS00625at 129.162 kb on - strand, within ABIE40_RS00625at 129.227 kb on + strand, within ABIE40_RS00625at 129.227 kb on + strand, within ABIE40_RS00625at 129.227 kb on + strand, within ABIE40_RS00625at 129.228 kb on - strand, within ABIE40_RS00625at 129.228 kb on - strand, within ABIE40_RS00625at 129.233 kb on + strand, within ABIE40_RS00625at 129.350 kb on + strand, within ABIE40_RS00625at 129.350 kb on + strand, within ABIE40_RS00625at 129.351 kb on - strand, within ABIE40_RS00625at 129.413 kb on + strand, within ABIE40_RS00625at 129.413 kb on + strand, within ABIE40_RS00625at 129.413 kb on + strand, within ABIE40_RS00625at 129.413 kb on + strand, within ABIE40_RS00625at 129.413 kb on + strand, within ABIE40_RS00625at 129.414 kb on - strand, within ABIE40_RS00625at 129.414 kb on - strand, within ABIE40_RS00625at 129.414 kb on - strand, within ABIE40_RS00625at 129.414 kb on - strand, within ABIE40_RS00625at 129.414 kb on - strand, within ABIE40_RS00625at 129.424 kb on + strand, within ABIE40_RS00625at 129.424 kb on + strand, within ABIE40_RS00625at 129.424 kb on + strand, within ABIE40_RS00625at 129.424 kb on + strand, within ABIE40_RS00625at 129.425 kb on - strand, within ABIE40_RS00625at 129.500 kb on + strand, within ABIE40_RS00625at 129.501 kb on - strand, within ABIE40_RS00625at 129.569 kb on + strand, within ABIE40_RS00625at 129.569 kb on + strand, within ABIE40_RS00625at 129.569 kb on + strand, within ABIE40_RS00625at 129.569 kb on + strand, within ABIE40_RS00625at 129.570 kb on - strand, within ABIE40_RS00625at 129.570 kb on - strand, within ABIE40_RS00625at 129.570 kb on - strand, within ABIE40_RS00625at 129.570 kb on - strand, within ABIE40_RS00625at 129.701 kb on + strand, within ABIE40_RS00625at 129.702 kb on - strand, within ABIE40_RS00625at 129.702 kb on - strand, within ABIE40_RS00625at 129.702 kb on - strand, within ABIE40_RS00625at 129.857 kb on - strand, within ABIE40_RS00625

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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126,828 + ABIE40_RS00615 0.56 +0.2
126,829 - ABIE40_RS00615 0.56 +0.4
126,845 + ABIE40_RS00615 0.57 -1.6
126,845 + ABIE40_RS00615 0.57 +1.9
126,846 - ABIE40_RS00615 0.57 -0.5
126,893 + ABIE40_RS00615 0.59 -0.7
126,893 + ABIE40_RS00615 0.59 -0.6
126,893 + ABIE40_RS00615 0.59 -0.7
126,893 + ABIE40_RS00615 0.59 +0.4
126,893 + ABIE40_RS00615 0.59 -2.0
126,911 + ABIE40_RS00615 0.60 -0.1
126,912 - ABIE40_RS00615 0.60 -0.5
127,005 + ABIE40_RS00615 0.65 +0.4
127,005 + ABIE40_RS00615 0.65 -1.2
127,006 - ABIE40_RS00615 0.65 -1.2
127,019 + ABIE40_RS00615 0.66 -0.4
127,020 - ABIE40_RS00615 0.66 +0.6
127,021 + ABIE40_RS00615 0.66 +1.4
127,022 - ABIE40_RS00615 0.66 -0.1
127,022 - ABIE40_RS00615 0.66 -0.4
127,022 - ABIE40_RS00615 0.66 -0.5
127,087 - ABIE40_RS00615 0.70 -0.5
127,161 + ABIE40_RS00615 0.74 +0.2
127,162 - ABIE40_RS00615 0.74 -0.2
127,162 - ABIE40_RS00615 0.74 -1.2
127,202 + ABIE40_RS00615 0.76 -0.1
127,203 - ABIE40_RS00615 0.76 -0.9
127,210 + ABIE40_RS00615 0.76 +1.3
127,211 - ABIE40_RS00615 0.76 -0.0
127,266 - ABIE40_RS00615 0.79 +0.4
127,267 + ABIE40_RS00615 0.80 -0.0
127,267 + ABIE40_RS00615 0.80 -0.4
127,267 + ABIE40_RS00615 0.80 -0.3
127,267 + ABIE40_RS00615 0.80 -1.4
127,267 + ABIE40_RS00615 0.80 +0.0
127,268 - ABIE40_RS00615 0.80 +0.7
127,268 - ABIE40_RS00615 0.80 -1.5
127,268 - ABIE40_RS00615 0.80 -0.5
127,292 + ABIE40_RS00615 0.81 -0.4
127,293 - ABIE40_RS00615 0.81 +1.1
127,352 + ABIE40_RS00615 0.84 -1.6
127,352 + ABIE40_RS00615 0.84 -0.5
127,394 + ABIE40_RS00615 0.86 +2.1
127,500 + +0.7
127,501 - +0.2
127,514 + -0.9
127,514 + -0.0
127,514 + +0.5
127,514 + -0.3
127,515 - +0.6
127,515 - -0.6
127,595 + +0.3
127,640 + +0.8
127,803 + -1.0
127,803 + -0.8
127,803 + -3.1
127,803 + -1.2
127,803 + -0.6
127,803 + -2.3
127,803 + -2.2
127,804 - -2.2
127,804 - -1.5
127,804 - -1.3
127,804 - -2.3
127,804 - -2.4
127,804 - -1.6
127,804 - -0.5
127,804 - -1.5
127,804 - -1.5
127,804 - -2.7
127,804 - -1.9
127,804 - -2.4
127,804 - -2.7
127,804 - -2.4
127,804 - -1.6
127,804 - -1.9
127,804 - -2.6
127,805 + -1.9
128,005 - ABIE40_RS00620 0.19 -1.6
128,005 - ABIE40_RS00620 0.19 +0.2
128,109 + ABIE40_RS00620 0.29 -2.0
128,110 - ABIE40_RS00620 0.29 -2.3
128,110 - ABIE40_RS00620 0.29 -1.6
128,110 - ABIE40_RS00620 0.29 -2.2
128,174 + ABIE40_RS00620 0.35 -1.0
128,174 + ABIE40_RS00620 0.35 +0.2
128,174 + ABIE40_RS00620 0.35 -2.4
128,175 - ABIE40_RS00620 0.35 -0.4
128,223 + ABIE40_RS00620 0.39 -1.3
128,223 + ABIE40_RS00620 0.39 -2.0
128,223 + ABIE40_RS00620 0.39 -1.9
128,223 + ABIE40_RS00620 0.39 +0.6
128,376 + ABIE40_RS00620 0.53 -1.9
128,376 + ABIE40_RS00620 0.53 -3.8
128,376 + ABIE40_RS00620 0.53 +3.2
128,376 + ABIE40_RS00620 0.53 -1.1
128,376 + ABIE40_RS00620 0.53 -2.1
128,377 - ABIE40_RS00620 0.54 -2.2
128,377 - ABIE40_RS00620 0.54 +0.2
128,377 - ABIE40_RS00620 0.54 -1.9
128,377 - ABIE40_RS00620 0.54 -0.8
128,377 - ABIE40_RS00620 0.54 -3.0
128,556 + ABIE40_RS00620 0.70 -2.1
128,557 - ABIE40_RS00620 0.70 -2.7
128,557 - ABIE40_RS00620 0.70 -0.5
128,557 - ABIE40_RS00620 0.70 -1.9
128,557 - ABIE40_RS00620 0.70 -1.3
128,557 - ABIE40_RS00620 0.70 -1.8
128,557 - ABIE40_RS00620 0.70 -1.8
128,604 + ABIE40_RS00620 0.74 -3.0
128,605 - ABIE40_RS00620 0.74 -1.7
128,605 - ABIE40_RS00620 0.74 -1.4
128,605 - ABIE40_RS00620 0.74 -2.8
128,615 - ABIE40_RS00620 0.75 -0.9
128,615 - ABIE40_RS00620 0.75 -0.5
128,615 - ABIE40_RS00620 0.75 -1.9
128,736 + ABIE40_RS00620 0.87 -2.0
128,784 + -0.4
128,784 + -1.0
128,784 + -0.0
128,784 + -2.4
128,785 - -0.4
128,785 - -1.8
128,786 + +0.6
128,786 + -1.5
128,786 + -4.2
128,786 + -0.5
128,787 - +0.8
128,787 - -2.3
128,787 - -1.9
128,787 - -3.6
128,787 - -3.5
128,835 + -1.5
128,835 + -2.4
128,836 - -2.3
128,836 - -1.5
128,836 - -3.3
128,976 + -3.0
129,083 + ABIE40_RS00625 0.17 -1.3
129,083 + ABIE40_RS00625 0.17 -2.8
129,083 + ABIE40_RS00625 0.17 -2.9
129,084 - ABIE40_RS00625 0.18 -1.6
129,119 + ABIE40_RS00625 0.21 -0.0
129,162 - ABIE40_RS00625 0.24 -3.5
129,227 + ABIE40_RS00625 0.30 -2.0
129,227 + ABIE40_RS00625 0.30 -3.1
129,227 + ABIE40_RS00625 0.30 -0.3
129,228 - ABIE40_RS00625 0.30 -1.9
129,228 - ABIE40_RS00625 0.30 +0.2
129,233 + ABIE40_RS00625 0.31 -1.8
129,350 + ABIE40_RS00625 0.41 -1.7
129,350 + ABIE40_RS00625 0.41 -2.1
129,351 - ABIE40_RS00625 0.41 -1.5
129,413 + ABIE40_RS00625 0.46 -1.7
129,413 + ABIE40_RS00625 0.46 -1.1
129,413 + ABIE40_RS00625 0.46 -2.8
129,413 + ABIE40_RS00625 0.46 -0.1
129,413 + ABIE40_RS00625 0.46 -2.3
129,414 - ABIE40_RS00625 0.46 -1.5
129,414 - ABIE40_RS00625 0.46 -2.2
129,414 - ABIE40_RS00625 0.46 -1.2
129,414 - ABIE40_RS00625 0.46 -2.2
129,414 - ABIE40_RS00625 0.46 +1.8
129,424 + ABIE40_RS00625 0.47 -1.5
129,424 + ABIE40_RS00625 0.47 -2.3
129,424 + ABIE40_RS00625 0.47 -1.0
129,424 + ABIE40_RS00625 0.47 -1.5
129,425 - ABIE40_RS00625 0.47 -0.2
129,500 + ABIE40_RS00625 0.54 -3.4
129,501 - ABIE40_RS00625 0.54 -2.1
129,569 + ABIE40_RS00625 0.60 -2.3
129,569 + ABIE40_RS00625 0.60 -2.8
129,569 + ABIE40_RS00625 0.60 -1.6
129,569 + ABIE40_RS00625 0.60 -0.9
129,570 - ABIE40_RS00625 0.60 -2.7
129,570 - ABIE40_RS00625 0.60 -1.9
129,570 - ABIE40_RS00625 0.60 -3.5
129,570 - ABIE40_RS00625 0.60 -2.0
129,701 + ABIE40_RS00625 0.71 -1.8
129,702 - ABIE40_RS00625 0.71 -0.5
129,702 - ABIE40_RS00625 0.71 -3.3
129,702 - ABIE40_RS00625 0.71 -0.6
129,857 - ABIE40_RS00625 0.85 -2.8

Or see this region's nucleotide sequence