Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS23845 and ABID97_RS23850 overlap by 4 nucleotides ABID97_RS23850 and ABID97_RS23855 are separated by 10 nucleotides ABID97_RS23855 and ABID97_RS23860 are separated by 41 nucleotides ABID97_RS23860 and ABID97_RS23865 are separated by 86 nucleotides
ABID97_RS23845: ABID97_RS23845 - biotin-dependent carboxyltransferase family protein, at 4,935,132 to 4,936,127
_RS23845
ABID97_RS23850: ABID97_RS23850 - 5-oxoprolinase subunit PxpB, at 4,936,124 to 4,936,771
_RS23850
ABID97_RS23855: ABID97_RS23855 - pantetheine-phosphate adenylyltransferase, at 4,936,782 to 4,937,285
_RS23855
ABID97_RS23860: ABID97_RS23860 - RsmD family RNA methyltransferase, at 4,937,327 to 4,937,992
_RS23860
ABID97_RS23865: ABID97_RS23865 - serine hydrolase domain-containing protein, at 4,938,079 to 4,939,935
_RS23865
Position (kb) 4936
4937
4938 Strain fitness (log2 ratio) -1
0
1
2 at 4936.261 kb on - strand, within ABID97_RS23850 at 4936.405 kb on - strand, within ABID97_RS23850 at 4936.405 kb on - strand, within ABID97_RS23850 at 4937.328 kb on + strand at 4937.329 kb on - strand at 4937.329 kb on - strand at 4937.455 kb on - strand, within ABID97_RS23860 at 4938.254 kb on + strand at 4938.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 4,936,261 - ABID97_RS23850 0.21 -0.2 4,936,405 - ABID97_RS23850 0.43 -0.1 4,936,405 - ABID97_RS23850 0.43 -0.3 4,937,328 + +0.5 4,937,329 - +0.1 4,937,329 - +0.6 4,937,455 - ABID97_RS23860 0.19 +1.9 4,938,254 + +1.5 4,938,255 - +0.1
Or see this region's nucleotide sequence