Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21850

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21845 and ABID97_RS21850 are separated by 37 nucleotidesABID97_RS21850 and ABID97_RS21855 overlap by 4 nucleotidesABID97_RS21855 and ABID97_RS21860 overlap by 4 nucleotides ABID97_RS21845: ABID97_RS21845 - acetate/propionate family kinase, at 4,520,130 to 4,521,383 _RS21845 ABID97_RS21850: ABID97_RS21850 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 4,521,421 to 4,522,692 _RS21850 ABID97_RS21855: ABID97_RS21855 - DUF1365 family protein, at 4,522,689 to 4,523,483 _RS21855 ABID97_RS21860: ABID97_RS21860 - FAD-dependent oxidoreductase, at 4,523,480 to 4,524,856 _RS21860 Position (kb) 4521 4522 4523Strain fitness (log2 ratio) -1 0 1at 4520.615 kb on - strand, within ABID97_RS21845at 4520.615 kb on - strand, within ABID97_RS21845at 4520.815 kb on + strand, within ABID97_RS21845at 4520.836 kb on + strand, within ABID97_RS21845at 4521.388 kb on + strandat 4521.389 kb on - strandat 4521.393 kb on + strandat 4521.393 kb on + strandat 4521.394 kb on - strandat 4521.497 kb on + strandat 4521.506 kb on + strandat 4521.507 kb on - strandat 4521.507 kb on - strandat 4521.510 kb on - strandat 4521.510 kb on - strandat 4521.643 kb on - strand, within ABID97_RS21850at 4521.827 kb on + strand, within ABID97_RS21850at 4521.827 kb on + strand, within ABID97_RS21850at 4522.178 kb on + strand, within ABID97_RS21850at 4522.229 kb on + strand, within ABID97_RS21850at 4523.080 kb on + strand, within ABID97_RS21855at 4523.081 kb on - strand, within ABID97_RS21855at 4523.116 kb on + strand, within ABID97_RS21855at 4523.296 kb on + strand, within ABID97_RS21855at 4523.297 kb on - strand, within ABID97_RS21855at 4523.408 kb on - strandat 4523.408 kb on - strandat 4523.461 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,520,615 - ABID97_RS21845 0.39 +0.2
4,520,615 - ABID97_RS21845 0.39 +0.8
4,520,815 + ABID97_RS21845 0.55 +0.3
4,520,836 + ABID97_RS21845 0.56 -0.2
4,521,388 + +0.9
4,521,389 - -0.2
4,521,393 + +0.1
4,521,393 + +0.2
4,521,394 - -0.6
4,521,497 + +0.7
4,521,506 + +0.4
4,521,507 - -0.5
4,521,507 - -0.5
4,521,510 - -0.5
4,521,510 - +0.1
4,521,643 - ABID97_RS21850 0.17 +1.6
4,521,827 + ABID97_RS21850 0.32 -0.0
4,521,827 + ABID97_RS21850 0.32 +0.5
4,522,178 + ABID97_RS21850 0.60 +0.1
4,522,229 + ABID97_RS21850 0.64 -0.1
4,523,080 + ABID97_RS21855 0.49 +0.1
4,523,081 - ABID97_RS21855 0.49 +0.3
4,523,116 + ABID97_RS21855 0.54 -0.8
4,523,296 + ABID97_RS21855 0.76 -0.9
4,523,297 - ABID97_RS21855 0.76 -0.0
4,523,408 - +0.2
4,523,408 - -1.4
4,523,461 + +1.2

Or see this region's nucleotide sequence