Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18975

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18970 and ABID97_RS18975 are separated by 48 nucleotidesABID97_RS18975 and ABID97_RS18980 are separated by 93 nucleotides ABID97_RS18970: ABID97_RS18970 - cytochrome P450, at 3,906,525 to 3,907,511 _RS18970 ABID97_RS18975: ABID97_RS18975 - ABC transporter substrate-binding protein, at 3,907,560 to 3,908,693 _RS18975 ABID97_RS18980: ABID97_RS18980 - SDR family oxidoreductase, at 3,908,787 to 3,909,572 _RS18980 Position (kb) 3907 3908 3909Strain fitness (log2 ratio) -2 -1 0 1 2at 3906.895 kb on - strand, within ABID97_RS18970at 3907.027 kb on + strand, within ABID97_RS18970at 3907.065 kb on + strand, within ABID97_RS18970at 3907.065 kb on + strand, within ABID97_RS18970at 3907.536 kb on - strandat 3907.869 kb on - strand, within ABID97_RS18975at 3907.869 kb on - strand, within ABID97_RS18975at 3908.373 kb on + strand, within ABID97_RS18975at 3908.374 kb on - strand, within ABID97_RS18975at 3908.374 kb on - strand, within ABID97_RS18975at 3908.436 kb on + strand, within ABID97_RS18975at 3908.638 kb on - strandat 3908.638 kb on - strandat 3908.638 kb on - strandat 3908.815 kb on + strandat 3909.315 kb on + strand, within ABID97_RS18980at 3909.316 kb on - strand, within ABID97_RS18980at 3909.668 kb on + strandat 3909.668 kb on + strandat 3909.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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3,906,895 - ABID97_RS18970 0.37 -0.8
3,907,027 + ABID97_RS18970 0.51 -1.2
3,907,065 + ABID97_RS18970 0.55 -0.1
3,907,065 + ABID97_RS18970 0.55 +0.2
3,907,536 - +1.5
3,907,869 - ABID97_RS18975 0.27 +2.0
3,907,869 - ABID97_RS18975 0.27 -0.2
3,908,373 + ABID97_RS18975 0.72 -0.3
3,908,374 - ABID97_RS18975 0.72 +0.2
3,908,374 - ABID97_RS18975 0.72 -2.4
3,908,436 + ABID97_RS18975 0.77 +0.2
3,908,638 - -0.1
3,908,638 - +0.4
3,908,638 - -0.2
3,908,815 + +0.6
3,909,315 + ABID97_RS18980 0.67 +0.2
3,909,316 - ABID97_RS18980 0.67 -0.2
3,909,668 + -0.3
3,909,668 + -0.4
3,909,669 - +0.2

Or see this region's nucleotide sequence