Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08835

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08830 and ABID97_RS08835 are separated by 13 nucleotidesABID97_RS08835 and ABID97_RS08840 are separated by 20 nucleotides ABID97_RS08830: ABID97_RS08830 - indolepyruvate oxidoreductase subunit beta family protein, at 1,849,286 to 1,850,794 _RS08830 ABID97_RS08835: ABID97_RS08835 - PDR/VanB family oxidoreductase, at 1,850,808 to 1,851,800 _RS08835 ABID97_RS08840: ABID97_RS08840 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,851,821 to 1,853,134 _RS08840 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -1 0 1at 1850.103 kb on - strand, within ABID97_RS08830at 1850.655 kb on - strandat 1850.985 kb on + strand, within ABID97_RS08835at 1851.265 kb on - strand, within ABID97_RS08835at 1851.265 kb on - strand, within ABID97_RS08835at 1851.831 kb on - strandat 1851.894 kb on - strandat 1851.894 kb on - strandat 1851.953 kb on + strand, within ABID97_RS08840at 1851.976 kb on - strand, within ABID97_RS08840at 1852.584 kb on - strand, within ABID97_RS08840at 1852.617 kb on - strand, within ABID97_RS08840at 1852.667 kb on + strand, within ABID97_RS08840at 1852.764 kb on - strand, within ABID97_RS08840at 1852.764 kb on - strand, within ABID97_RS08840

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,850,103 - ABID97_RS08830 0.54 +0.5
1,850,655 - +0.2
1,850,985 + ABID97_RS08835 0.18 +0.8
1,851,265 - ABID97_RS08835 0.46 +0.5
1,851,265 - ABID97_RS08835 0.46 +0.4
1,851,831 - +0.7
1,851,894 - -0.1
1,851,894 - +0.0
1,851,953 + ABID97_RS08840 0.10 -0.5
1,851,976 - ABID97_RS08840 0.12 -0.4
1,852,584 - ABID97_RS08840 0.58 +0.6
1,852,617 - ABID97_RS08840 0.61 +0.3
1,852,667 + ABID97_RS08840 0.64 -0.3
1,852,764 - ABID97_RS08840 0.72 -0.1
1,852,764 - ABID97_RS08840 0.72 -0.2

Or see this region's nucleotide sequence