Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS08830 and ABID97_RS08835 are separated by 13 nucleotides ABID97_RS08835 and ABID97_RS08840 are separated by 20 nucleotides
ABID97_RS08830: ABID97_RS08830 - indolepyruvate oxidoreductase subunit beta family protein, at 1,849,286 to 1,850,794
_RS08830
ABID97_RS08835: ABID97_RS08835 - PDR/VanB family oxidoreductase, at 1,850,808 to 1,851,800
_RS08835
ABID97_RS08840: ABID97_RS08840 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 1,851,821 to 1,853,134
_RS08840
Position (kb)
1850
1851
1852 Strain fitness (log2 ratio)
-1
0
1 at 1850.103 kb on - strand, within ABID97_RS08830 at 1850.655 kb on - strand at 1850.985 kb on + strand, within ABID97_RS08835 at 1851.265 kb on - strand, within ABID97_RS08835 at 1851.265 kb on - strand, within ABID97_RS08835 at 1851.831 kb on - strand at 1851.894 kb on - strand at 1851.894 kb on - strand at 1851.953 kb on + strand, within ABID97_RS08840 at 1851.976 kb on - strand, within ABID97_RS08840 at 1852.584 kb on - strand, within ABID97_RS08840 at 1852.617 kb on - strand, within ABID97_RS08840 at 1852.667 kb on + strand, within ABID97_RS08840 at 1852.764 kb on - strand, within ABID97_RS08840 at 1852.764 kb on - strand, within ABID97_RS08840
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 1,850,103 - ABID97_RS08830 0.54 +0.5 1,850,655 - +0.2 1,850,985 + ABID97_RS08835 0.18 +0.8 1,851,265 - ABID97_RS08835 0.46 +0.5 1,851,265 - ABID97_RS08835 0.46 +0.4 1,851,831 - +0.7 1,851,894 - -0.1 1,851,894 - +0.0 1,851,953 + ABID97_RS08840 0.10 -0.5 1,851,976 - ABID97_RS08840 0.12 -0.4 1,852,584 - ABID97_RS08840 0.58 +0.6 1,852,617 - ABID97_RS08840 0.61 +0.3 1,852,667 + ABID97_RS08840 0.64 -0.3 1,852,764 - ABID97_RS08840 0.72 -0.1 1,852,764 - ABID97_RS08840 0.72 -0.2
Or see this region's nucleotide sequence