Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00205

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00195 and ABID97_RS00200 overlap by 4 nucleotidesABID97_RS00200 and ABID97_RS00205 overlap by 14 nucleotidesABID97_RS00205 and ABID97_RS00210 overlap by 11 nucleotidesABID97_RS00210 and ABID97_RS00215 overlap by 4 nucleotides ABID97_RS00195: ABID97_RS00195 - DUF4350 domain-containing protein, at 45,988 to 47,241 _RS00195 ABID97_RS00200: ABID97_RS00200 - DUF4129 domain-containing protein, at 47,238 to 48,020 _RS00200 ABID97_RS00205: ABID97_RS00205 - hypothetical protein, at 48,007 to 48,738 _RS00205 ABID97_RS00210: ABID97_RS00210 - stage II sporulation protein M, at 48,728 to 49,720 _RS00210 ABID97_RS00215: ABID97_RS00215 - RDD family protein, at 49,717 to 50,439 _RS00215 Position (kb) 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 47.105 kb on + strand, within ABID97_RS00195at 47.105 kb on + strand, within ABID97_RS00195at 47.105 kb on + strand, within ABID97_RS00195at 47.105 kb on + strand, within ABID97_RS00195at 47.105 kb on + strand, within ABID97_RS00195at 47.106 kb on - strand, within ABID97_RS00195at 47.106 kb on - strand, within ABID97_RS00195at 47.344 kb on + strand, within ABID97_RS00200at 47.345 kb on - strand, within ABID97_RS00200at 47.501 kb on - strand, within ABID97_RS00200at 48.074 kb on + strandat 48.075 kb on - strandat 48.075 kb on - strandat 48.075 kb on - strandat 48.188 kb on + strand, within ABID97_RS00205at 48.188 kb on + strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.189 kb on - strand, within ABID97_RS00205at 48.618 kb on - strand, within ABID97_RS00205at 48.618 kb on - strand, within ABID97_RS00205at 48.793 kb on - strandat 48.831 kb on + strand, within ABID97_RS00210at 48.831 kb on + strand, within ABID97_RS00210at 48.832 kb on - strand, within ABID97_RS00210at 48.832 kb on - strand, within ABID97_RS00210at 48.832 kb on - strand, within ABID97_RS00210at 48.915 kb on + strand, within ABID97_RS00210at 49.104 kb on + strand, within ABID97_RS00210at 49.105 kb on - strand, within ABID97_RS00210at 49.221 kb on + strand, within ABID97_RS00210at 49.221 kb on + strand, within ABID97_RS00210at 49.221 kb on + strand, within ABID97_RS00210at 49.221 kb on + strand, within ABID97_RS00210at 49.221 kb on + strand, within ABID97_RS00210at 49.222 kb on - strand, within ABID97_RS00210at 49.222 kb on - strand, within ABID97_RS00210at 49.222 kb on - strand, within ABID97_RS00210at 49.222 kb on - strand, within ABID97_RS00210at 49.222 kb on - strand, within ABID97_RS00210at 49.222 kb on - strand, within ABID97_RS00210at 49.225 kb on - strand, within ABID97_RS00210at 49.290 kb on + strand, within ABID97_RS00210at 49.290 kb on + strand, within ABID97_RS00210at 49.290 kb on + strand, within ABID97_RS00210at 49.290 kb on + strand, within ABID97_RS00210at 49.290 kb on + strand, within ABID97_RS00210at 49.290 kb on + strand, within ABID97_RS00210at 49.291 kb on - strand, within ABID97_RS00210at 49.291 kb on - strand, within ABID97_RS00210at 49.291 kb on - strand, within ABID97_RS00210at 49.357 kb on - strand, within ABID97_RS00210at 49.486 kb on - strand, within ABID97_RS00210at 49.605 kb on + strand, within ABID97_RS00210

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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47,105 + ABID97_RS00195 0.89 -0.6
47,105 + ABID97_RS00195 0.89 -0.2
47,105 + ABID97_RS00195 0.89 -0.8
47,105 + ABID97_RS00195 0.89 +0.2
47,105 + ABID97_RS00195 0.89 -0.0
47,106 - ABID97_RS00195 0.89 +1.2
47,106 - ABID97_RS00195 0.89 -0.6
47,344 + ABID97_RS00200 0.14 +0.9
47,345 - ABID97_RS00200 0.14 +0.1
47,501 - ABID97_RS00200 0.34 +0.1
48,074 + -0.7
48,075 - -0.4
48,075 - -0.8
48,075 - -0.4
48,188 + ABID97_RS00205 0.25 -0.2
48,188 + ABID97_RS00205 0.25 +0.0
48,189 - ABID97_RS00205 0.25 -0.6
48,189 - ABID97_RS00205 0.25 +0.4
48,189 - ABID97_RS00205 0.25 +0.3
48,189 - ABID97_RS00205 0.25 +0.6
48,189 - ABID97_RS00205 0.25 -0.1
48,189 - ABID97_RS00205 0.25 +0.4
48,189 - ABID97_RS00205 0.25 +0.2
48,618 - ABID97_RS00205 0.83 +0.4
48,618 - ABID97_RS00205 0.83 +0.2
48,793 - +0.4
48,831 + ABID97_RS00210 0.10 -0.1
48,831 + ABID97_RS00210 0.10 +0.2
48,832 - ABID97_RS00210 0.10 -0.2
48,832 - ABID97_RS00210 0.10 -0.4
48,832 - ABID97_RS00210 0.10 +0.4
48,915 + ABID97_RS00210 0.19 +1.0
49,104 + ABID97_RS00210 0.38 -0.0
49,105 - ABID97_RS00210 0.38 +0.0
49,221 + ABID97_RS00210 0.50 +0.8
49,221 + ABID97_RS00210 0.50 +0.9
49,221 + ABID97_RS00210 0.50 -0.0
49,221 + ABID97_RS00210 0.50 -0.1
49,221 + ABID97_RS00210 0.50 -0.3
49,222 - ABID97_RS00210 0.50 -1.5
49,222 - ABID97_RS00210 0.50 +0.2
49,222 - ABID97_RS00210 0.50 -0.8
49,222 - ABID97_RS00210 0.50 +0.4
49,222 - ABID97_RS00210 0.50 +0.1
49,222 - ABID97_RS00210 0.50 +0.2
49,225 - ABID97_RS00210 0.50 -0.6
49,290 + ABID97_RS00210 0.57 +0.1
49,290 + ABID97_RS00210 0.57 +0.2
49,290 + ABID97_RS00210 0.57 -0.1
49,290 + ABID97_RS00210 0.57 -1.9
49,290 + ABID97_RS00210 0.57 -0.3
49,290 + ABID97_RS00210 0.57 +0.2
49,291 - ABID97_RS00210 0.57 -0.2
49,291 - ABID97_RS00210 0.57 +2.2
49,291 - ABID97_RS00210 0.57 -0.5
49,357 - ABID97_RS00210 0.63 -0.1
49,486 - ABID97_RS00210 0.76 +0.8
49,605 + ABID97_RS00210 0.88 -0.1

Or see this region's nucleotide sequence