Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yebS and yebT overlap by 32 nucleotides yebT and yebU are separated by 79 nucleotides
b1833: yebS - conserved inner membrane protein (NCBI), at 1,914,282 to 1,915,565
yebS
b1834: yebT - orf, hypothetical protein (VIMSS), at 1,915,534 to 1,918,167
yebT
b1835: yebU - putative nucleolar proteins (VIMSS), at 1,918,247 to 1,919,686
yebU
Position (kb)
1915
1916
1917
1918
1919 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1914.615 kb on - strand, within yebS at 1914.615 kb on - strand, within yebS at 1914.688 kb on - strand, within yebS at 1914.688 kb on - strand, within yebS at 1914.735 kb on + strand, within yebS at 1914.763 kb on + strand, within yebS at 1914.763 kb on + strand, within yebS at 1914.821 kb on + strand, within yebS at 1914.953 kb on + strand, within yebS at 1914.953 kb on + strand, within yebS at 1915.011 kb on - strand, within yebS at 1915.354 kb on + strand, within yebS at 1915.457 kb on + strand at 1915.676 kb on - strand at 1915.711 kb on + strand at 1915.759 kb on + strand at 1915.909 kb on + strand, within yebT at 1915.920 kb on + strand, within yebT at 1915.975 kb on + strand, within yebT at 1916.098 kb on + strand, within yebT at 1916.277 kb on - strand, within yebT at 1916.277 kb on - strand, within yebT at 1916.307 kb on + strand, within yebT at 1916.343 kb on + strand, within yebT at 1916.351 kb on - strand, within yebT at 1916.517 kb on + strand, within yebT at 1916.533 kb on - strand, within yebT at 1916.697 kb on - strand, within yebT at 1916.926 kb on + strand, within yebT at 1916.926 kb on + strand, within yebT at 1917.024 kb on - strand, within yebT at 1917.204 kb on + strand, within yebT at 1917.326 kb on - strand, within yebT at 1917.326 kb on - strand, within yebT at 1917.618 kb on + strand, within yebT at 1917.625 kb on + strand, within yebT at 1917.757 kb on - strand, within yebT at 1917.757 kb on - strand, within yebT at 1917.829 kb on + strand, within yebT at 1917.829 kb on + strand, within yebT at 1917.884 kb on + strand, within yebT at 1917.937 kb on + strand at 1917.984 kb on - strand at 1918.087 kb on + strand at 1918.174 kb on + strand at 1918.237 kb on + strand at 1918.316 kb on - strand at 1918.509 kb on + strand, within yebU at 1918.509 kb on + strand, within yebU at 1919.038 kb on - strand, within yebU at 1919.085 kb on - strand, within yebU at 1919.085 kb on - strand, within yebU
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 1,914,615 - yebS b1833 0.26 +0.2 1,914,615 - yebS b1833 0.26 +0.1 1,914,688 - yebS b1833 0.32 +0.5 1,914,688 - yebS b1833 0.32 -0.3 1,914,735 + yebS b1833 0.35 -2.0 1,914,763 + yebS b1833 0.37 -2.0 1,914,763 + yebS b1833 0.37 +0.7 1,914,821 + yebS b1833 0.42 -3.0 1,914,953 + yebS b1833 0.52 +0.0 1,914,953 + yebS b1833 0.52 +0.1 1,915,011 - yebS b1833 0.57 -0.1 1,915,354 + yebS b1833 0.83 +0.2 1,915,457 + +0.3 1,915,676 - +0.5 1,915,711 + -0.5 1,915,759 + -0.1 1,915,909 + yebT b1834 0.14 -0.1 1,915,920 + yebT b1834 0.15 +0.3 1,915,975 + yebT b1834 0.17 -3.1 1,916,098 + yebT b1834 0.21 +0.2 1,916,277 - yebT b1834 0.28 -1.1 1,916,277 - yebT b1834 0.28 -2.3 1,916,307 + yebT b1834 0.29 +0.5 1,916,343 + yebT b1834 0.31 -1.4 1,916,351 - yebT b1834 0.31 +1.1 1,916,517 + yebT b1834 0.37 -0.4 1,916,533 - yebT b1834 0.38 -0.3 1,916,697 - yebT b1834 0.44 +0.8 1,916,926 + yebT b1834 0.53 +0.2 1,916,926 + yebT b1834 0.53 -0.6 1,917,024 - yebT b1834 0.57 -2.0 1,917,204 + yebT b1834 0.63 +0.9 1,917,326 - yebT b1834 0.68 +0.7 1,917,326 - yebT b1834 0.68 +0.3 1,917,618 + yebT b1834 0.79 -1.8 1,917,625 + yebT b1834 0.79 +0.4 1,917,757 - yebT b1834 0.84 -1.4 1,917,757 - yebT b1834 0.84 +1.1 1,917,829 + yebT b1834 0.87 +0.1 1,917,829 + yebT b1834 0.87 +1.5 1,917,884 + yebT b1834 0.89 -0.0 1,917,937 + -0.1 1,917,984 - +0.7 1,918,087 + -3.0 1,918,174 + -0.7 1,918,237 + +0.2 1,918,316 - -2.1 1,918,509 + yebU b1835 0.18 +0.6 1,918,509 + yebU b1835 0.18 +0.1 1,919,038 - yebU b1835 0.55 +0.4 1,919,085 - yebU b1835 0.58 +0.4 1,919,085 - yebU b1835 0.58 -2.5
Or see this region's nucleotide sequence