Strain Fitness in Escherichia coli BW25113 around b1200

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdhaM and dhaL are separated by 10 nucleotidesdhaL and b1200 are separated by 10 nucleotidesb1200 and b1201 are separated by 227 nucleotides b1198: dhaM - fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq), at 1,246,919 to 1,248,337 dhaM b1199: dhaL - dihydroxyacetone kinase, C-terminal domain (NCBI), at 1,248,348 to 1,248,980 dhaL b1200: b1200 - putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS), at 1,248,991 to 1,250,061 b1200 b1201: b1201 - putative sensor-type regulator (VIMSS), at 1,250,289 to 1,252,208 b1201 Position (kb) 1248 1249 1250 1251Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1248.025 kb on + strand, within dhaMat 1248.120 kb on + strand, within dhaMat 1248.131 kb on - strand, within dhaMat 1248.142 kb on + strand, within dhaMat 1248.251 kb on + strandat 1248.251 kb on + strandat 1248.305 kb on + strandat 1248.472 kb on + strand, within dhaLat 1248.497 kb on - strand, within dhaLat 1248.512 kb on - strand, within dhaLat 1248.571 kb on + strand, within dhaLat 1248.907 kb on - strand, within dhaLat 1248.907 kb on - strand, within dhaLat 1248.967 kb on + strandat 1249.100 kb on + strand, within b1200at 1249.100 kb on + strand, within b1200at 1249.132 kb on + strand, within b1200at 1249.317 kb on + strand, within b1200at 1249.446 kb on + strand, within b1200at 1249.487 kb on - strand, within b1200at 1249.531 kb on + strand, within b1200at 1249.539 kb on - strand, within b1200at 1249.544 kb on - strand, within b1200at 1249.544 kb on - strand, within b1200at 1249.612 kb on - strand, within b1200at 1249.710 kb on - strand, within b1200at 1249.761 kb on + strand, within b1200at 1249.761 kb on + strand, within b1200at 1249.792 kb on + strand, within b1200at 1249.978 kb on - strandat 1250.384 kb on + strandat 1250.384 kb on + strandat 1250.389 kb on + strandat 1250.426 kb on - strandat 1250.464 kb on - strandat 1250.466 kb on + strandat 1250.468 kb on + strandat 1250.567 kb on - strand, within b1201at 1250.777 kb on + strand, within b1201at 1250.780 kb on + strand, within b1201at 1250.780 kb on + strand, within b1201at 1251.041 kb on + strand, within b1201at 1251.045 kb on + strand, within b1201at 1251.045 kb on + strand, within b1201

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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1,248,025 + dhaM b1198 0.78 -2.4
1,248,120 + dhaM b1198 0.85 +0.8
1,248,131 - dhaM b1198 0.85 +0.6
1,248,142 + dhaM b1198 0.86 -1.2
1,248,251 + +0.2
1,248,251 + +0.9
1,248,305 + +0.1
1,248,472 + dhaL b1199 0.20 +0.4
1,248,497 - dhaL b1199 0.24 -0.6
1,248,512 - dhaL b1199 0.26 +0.4
1,248,571 + dhaL b1199 0.35 +0.8
1,248,907 - dhaL b1199 0.88 +0.9
1,248,907 - dhaL b1199 0.88 -0.2
1,248,967 + +0.9
1,249,100 + b1200 b1200 0.10 +0.7
1,249,100 + b1200 b1200 0.10 -2.6
1,249,132 + b1200 b1200 0.13 -1.1
1,249,317 + b1200 b1200 0.30 +0.8
1,249,446 + b1200 b1200 0.42 +1.3
1,249,487 - b1200 b1200 0.46 +0.4
1,249,531 + b1200 b1200 0.50 +0.4
1,249,539 - b1200 b1200 0.51 +1.2
1,249,544 - b1200 b1200 0.52 +1.3
1,249,544 - b1200 b1200 0.52 -0.4
1,249,612 - b1200 b1200 0.58 +0.6
1,249,710 - b1200 b1200 0.67 +0.5
1,249,761 + b1200 b1200 0.72 +2.0
1,249,761 + b1200 b1200 0.72 +0.7
1,249,792 + b1200 b1200 0.75 +0.9
1,249,978 - +1.0
1,250,384 + +1.0
1,250,384 + +1.4
1,250,389 + -1.0
1,250,426 - +1.1
1,250,464 - +1.3
1,250,466 + +0.9
1,250,468 + +0.2
1,250,567 - b1201 b1201 0.14 +0.6
1,250,777 + b1201 b1201 0.25 +0.6
1,250,780 + b1201 b1201 0.26 -3.8
1,250,780 + b1201 b1201 0.26 -2.1
1,251,041 + b1201 b1201 0.39 +1.4
1,251,045 + b1201 b1201 0.39 -0.2
1,251,045 + b1201 b1201 0.39 +0.6

Or see this region's nucleotide sequence