Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_97

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_96 and PfGW456L13_97 are separated by 124 nucleotidesPfGW456L13_97 and PfGW456L13_98 are separated by 249 nucleotidesPfGW456L13_98 and PfGW456L13_99 are separated by 90 nucleotides PfGW456L13_96 - Putative heat shock protein YegD, at 111,161 to 112,435 _96 PfGW456L13_97 - membrane protein, putative, at 112,560 to 113,573 _97 PfGW456L13_98 - Phosphate starvation-inducible protein psiF precursor, at 113,823 to 114,131 _98 PfGW456L13_99 - hypothetical protein, at 114,222 to 118,439 _99 Position (kb) 112 113 114Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 111.604 kb on - strand, within PfGW456L13_96at 111.675 kb on - strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.730 kb on + strand, within PfGW456L13_96at 111.731 kb on - strand, within PfGW456L13_96at 111.731 kb on - strand, within PfGW456L13_96at 111.731 kb on - strand, within PfGW456L13_96at 111.731 kb on - strand, within PfGW456L13_96at 111.908 kb on + strand, within PfGW456L13_96at 111.908 kb on + strand, within PfGW456L13_96at 111.908 kb on + strand, within PfGW456L13_96at 111.908 kb on + strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.909 kb on - strand, within PfGW456L13_96at 111.965 kb on + strand, within PfGW456L13_96at 111.966 kb on - strand, within PfGW456L13_96at 111.966 kb on - strand, within PfGW456L13_96at 112.005 kb on - strand, within PfGW456L13_96at 112.005 kb on - strand, within PfGW456L13_96at 112.005 kb on - strand, within PfGW456L13_96at 112.277 kb on - strand, within PfGW456L13_96at 112.426 kb on + strandat 112.427 kb on - strandat 112.482 kb on - strandat 112.482 kb on - strandat 112.482 kb on - strandat 112.597 kb on + strandat 112.597 kb on + strandat 112.598 kb on - strandat 112.598 kb on - strandat 112.603 kb on + strandat 112.603 kb on + strandat 112.603 kb on + strandat 112.604 kb on - strandat 112.606 kb on + strandat 112.607 kb on - strandat 112.726 kb on + strand, within PfGW456L13_97at 112.726 kb on + strand, within PfGW456L13_97at 112.726 kb on + strand, within PfGW456L13_97at 112.726 kb on + strand, within PfGW456L13_97at 112.727 kb on - strand, within PfGW456L13_97at 112.727 kb on - strand, within PfGW456L13_97at 112.727 kb on - strand, within PfGW456L13_97at 112.802 kb on + strand, within PfGW456L13_97at 112.803 kb on - strand, within PfGW456L13_97at 113.218 kb on + strand, within PfGW456L13_97at 113.218 kb on + strand, within PfGW456L13_97at 113.573 kb on + strandat 113.573 kb on + strandat 113.573 kb on + strandat 113.573 kb on + strandat 113.573 kb on + strandat 113.573 kb on + strandat 113.574 kb on - strandat 113.574 kb on - strandat 113.597 kb on - strandat 113.638 kb on - strandat 113.659 kb on + strandat 113.659 kb on + strandat 113.660 kb on - strandat 113.750 kb on + strandat 113.750 kb on + strandat 113.751 kb on - strandat 113.751 kb on - strandat 113.824 kb on + strandat 114.183 kb on + strandat 114.183 kb on + strandat 114.184 kb on - strandat 114.184 kb on - strandat 114.184 kb on - strandat 114.184 kb on - strandat 114.184 kb on - strandat 114.197 kb on + strandat 114.198 kb on - strandat 114.198 kb on - strandat 114.198 kb on - strandat 114.198 kb on - strandat 114.284 kb on - strandat 114.367 kb on + strandat 114.367 kb on + strandat 114.367 kb on + strandat 114.368 kb on - strandat 114.368 kb on - strandat 114.406 kb on + strandat 114.406 kb on + strandat 114.406 kb on + strandat 114.406 kb on + strandat 114.406 kb on + strandat 114.406 kb on + strandat 114.407 kb on - strandat 114.407 kb on - strandat 114.407 kb on - strandat 114.407 kb on - strandat 114.407 kb on - strandat 114.407 kb on - strandat 114.407 kb on - strandat 114.421 kb on + strandat 114.422 kb on - strandat 114.422 kb on - strandat 114.422 kb on - strandat 114.422 kb on - strandat 114.422 kb on - strandat 114.433 kb on - strandat 114.438 kb on + strandat 114.438 kb on + strandat 114.507 kb on - strandat 114.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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111,604 - PfGW456L13_96 0.35 -0.8
111,675 - PfGW456L13_96 0.40 -2.9
111,730 + PfGW456L13_96 0.45 -0.5
111,730 + PfGW456L13_96 0.45 +0.7
111,730 + PfGW456L13_96 0.45 -1.3
111,730 + PfGW456L13_96 0.45 +0.0
111,730 + PfGW456L13_96 0.45 -1.6
111,730 + PfGW456L13_96 0.45 -0.1
111,730 + PfGW456L13_96 0.45 -1.6
111,730 + PfGW456L13_96 0.45 +0.2
111,731 - PfGW456L13_96 0.45 +1.1
111,731 - PfGW456L13_96 0.45 -0.1
111,731 - PfGW456L13_96 0.45 +1.0
111,731 - PfGW456L13_96 0.45 -1.1
111,908 + PfGW456L13_96 0.59 -0.3
111,908 + PfGW456L13_96 0.59 +0.9
111,908 + PfGW456L13_96 0.59 +0.1
111,908 + PfGW456L13_96 0.59 +0.1
111,909 - PfGW456L13_96 0.59 -0.7
111,909 - PfGW456L13_96 0.59 -2.6
111,909 - PfGW456L13_96 0.59 +1.2
111,909 - PfGW456L13_96 0.59 +1.4
111,909 - PfGW456L13_96 0.59 +0.7
111,909 - PfGW456L13_96 0.59 -0.7
111,909 - PfGW456L13_96 0.59 -0.9
111,909 - PfGW456L13_96 0.59 -1.6
111,965 + PfGW456L13_96 0.63 -2.7
111,966 - PfGW456L13_96 0.63 -1.1
111,966 - PfGW456L13_96 0.63 -1.9
112,005 - PfGW456L13_96 0.66 -2.1
112,005 - PfGW456L13_96 0.66 -2.4
112,005 - PfGW456L13_96 0.66 +1.0
112,277 - PfGW456L13_96 0.88 -2.3
112,426 + -0.3
112,427 - -2.1
112,482 - +0.3
112,482 - -1.2
112,482 - +1.3
112,597 + +1.4
112,597 + +2.3
112,598 - +0.8
112,598 - +0.1
112,603 + +0.4
112,603 + -0.0
112,603 + -0.2
112,604 - +1.3
112,606 + +1.5
112,607 - +0.9
112,726 + PfGW456L13_97 0.16 -0.1
112,726 + PfGW456L13_97 0.16 +0.7
112,726 + PfGW456L13_97 0.16 +0.1
112,726 + PfGW456L13_97 0.16 -2.2
112,727 - PfGW456L13_97 0.16 +1.3
112,727 - PfGW456L13_97 0.16 +0.3
112,727 - PfGW456L13_97 0.16 +1.4
112,802 + PfGW456L13_97 0.24 +0.8
112,803 - PfGW456L13_97 0.24 +1.8
113,218 + PfGW456L13_97 0.65 +1.3
113,218 + PfGW456L13_97 0.65 +0.4
113,573 + +1.1
113,573 + +1.1
113,573 + +0.8
113,573 + +0.7
113,573 + -0.0
113,573 + +0.8
113,574 - +1.3
113,574 - -0.7
113,597 - -3.1
113,638 - -0.5
113,659 + -0.7
113,659 + +1.7
113,660 - +1.4
113,750 + -0.3
113,750 + +1.1
113,751 - +1.8
113,751 - -0.1
113,824 + +0.0
114,183 + +0.6
114,183 + -0.1
114,184 - -1.8
114,184 - +0.4
114,184 - +1.5
114,184 - -0.0
114,184 - +0.3
114,197 + +0.6
114,198 - +0.9
114,198 - -0.7
114,198 - -0.4
114,198 - +0.7
114,284 - -0.1
114,367 + -0.6
114,367 + -0.2
114,367 + +0.7
114,368 - -2.9
114,368 - -0.0
114,406 + +0.4
114,406 + -0.9
114,406 + +0.6
114,406 + +0.1
114,406 + -2.9
114,406 + +0.4
114,407 - -1.5
114,407 - -1.9
114,407 - +0.1
114,407 - +0.7
114,407 - +0.7
114,407 - +0.9
114,407 - -2.1
114,421 + +0.3
114,422 - -0.5
114,422 - +0.9
114,422 - -0.5
114,422 - +0.8
114,422 - -0.0
114,433 - +0.6
114,438 + +0.9
114,438 + +0.6
114,507 - -0.6
114,507 - -0.6

Or see this region's nucleotide sequence