Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_898

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_897 and PfGW456L13_898 overlap by 8 nucleotidesPfGW456L13_898 and PfGW456L13_899 are separated by 3 nucleotides PfGW456L13_897 - 2-octaprenyl-6-methoxyphenol hydroxylase (EC 1.14.13.-), at 1,004,037 to 1,005,224 _897 PfGW456L13_898 - FIG00954652: hypothetical protein, at 1,005,217 to 1,005,369 _898 PfGW456L13_899 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (EC 1.14.13.-), at 1,005,373 to 1,006,596 _899 Position (kb) 1005 1006Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1005.222 kb on + strandat 1005.260 kb on + strand, within PfGW456L13_898at 1005.260 kb on + strand, within PfGW456L13_898at 1005.261 kb on - strand, within PfGW456L13_898at 1005.261 kb on - strand, within PfGW456L13_898at 1005.261 kb on - strand, within PfGW456L13_898at 1005.265 kb on + strand, within PfGW456L13_898at 1005.265 kb on + strand, within PfGW456L13_898at 1005.265 kb on + strand, within PfGW456L13_898at 1005.265 kb on + strand, within PfGW456L13_898at 1005.266 kb on - strand, within PfGW456L13_898at 1005.266 kb on - strand, within PfGW456L13_898at 1005.266 kb on - strand, within PfGW456L13_898at 1005.266 kb on - strand, within PfGW456L13_898at 1005.334 kb on + strand, within PfGW456L13_898at 1005.334 kb on + strand, within PfGW456L13_898

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,005,222 + +0.0
1,005,260 + PfGW456L13_898 0.28 -0.2
1,005,260 + PfGW456L13_898 0.28 +0.4
1,005,261 - PfGW456L13_898 0.29 +1.1
1,005,261 - PfGW456L13_898 0.29 +1.8
1,005,261 - PfGW456L13_898 0.29 -3.9
1,005,265 + PfGW456L13_898 0.31 +0.7
1,005,265 + PfGW456L13_898 0.31 +0.5
1,005,265 + PfGW456L13_898 0.31 +1.3
1,005,265 + PfGW456L13_898 0.31 +0.8
1,005,266 - PfGW456L13_898 0.32 +1.5
1,005,266 - PfGW456L13_898 0.32 +1.5
1,005,266 - PfGW456L13_898 0.32 +2.1
1,005,266 - PfGW456L13_898 0.32 -0.5
1,005,334 + PfGW456L13_898 0.76 -0.3
1,005,334 + PfGW456L13_898 0.76 +1.7

Or see this region's nucleotide sequence