Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_792

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_789 and PfGW456L13_790 overlap by 36 nucleotidesPfGW456L13_790 and PfGW456L13_791 overlap by 14 nucleotidesPfGW456L13_791 and PfGW456L13_792 are separated by 18 nucleotidesPfGW456L13_792 and PfGW456L13_793 are separated by 289 nucleotides PfGW456L13_789 - hypothetical protein, at 892,516 to 892,659 _789 PfGW456L13_790 - hypothetical protein, at 892,624 to 893,007 _790 PfGW456L13_791 - hypothetical protein, at 892,994 to 893,566 _791 PfGW456L13_792 - hypothetical protein, at 893,585 to 893,746 _792 PfGW456L13_793 - Acetylglutamate kinase (EC 2.7.2.8), at 894,036 to 894,941 _793 Position (kb) 893 894Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 892.599 kb on + strand, within PfGW456L13_789at 892.599 kb on + strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.708 kb on + strand, within PfGW456L13_790at 892.708 kb on + strand, within PfGW456L13_790at 892.708 kb on + strand, within PfGW456L13_790at 892.709 kb on - strand, within PfGW456L13_790at 892.709 kb on - strand, within PfGW456L13_790at 892.715 kb on + strand, within PfGW456L13_790at 892.716 kb on - strand, within PfGW456L13_790at 892.797 kb on - strand, within PfGW456L13_790at 892.797 kb on - strand, within PfGW456L13_790at 893.169 kb on + strand, within PfGW456L13_791at 893.169 kb on + strand, within PfGW456L13_791at 893.169 kb on + strand, within PfGW456L13_791at 893.170 kb on - strand, within PfGW456L13_791at 893.312 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.346 kb on + strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.347 kb on - strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.361 kb on + strand, within PfGW456L13_791at 893.362 kb on - strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.430 kb on + strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.431 kb on - strand, within PfGW456L13_791at 893.453 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.455 kb on + strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.456 kb on - strand, within PfGW456L13_791at 893.462 kb on + strand, within PfGW456L13_791at 893.463 kb on - strand, within PfGW456L13_791at 893.690 kb on + strand, within PfGW456L13_792at 893.690 kb on + strand, within PfGW456L13_792at 893.690 kb on + strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.691 kb on - strand, within PfGW456L13_792at 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.786 kb on + strandat 893.796 kb on + strandat 893.796 kb on + strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.797 kb on - strandat 893.849 kb on + strandat 893.849 kb on + strandat 893.849 kb on + strandat 893.849 kb on + strandat 893.850 kb on - strandat 893.850 kb on - strandat 893.878 kb on + strandat 893.878 kb on + strandat 893.878 kb on + strandat 893.879 kb on - strandat 893.879 kb on - strandat 893.895 kb on + strandat 893.895 kb on + strandat 893.896 kb on - strandat 893.917 kb on - strandat 893.945 kb on + strandat 893.987 kb on + strandat 893.988 kb on - strandat 893.988 kb on - strandat 893.995 kb on + strandat 893.996 kb on - strandat 894.021 kb on + strandat 894.196 kb on + strand, within PfGW456L13_793at 894.196 kb on + strand, within PfGW456L13_793at 894.196 kb on + strand, within PfGW456L13_793at 894.197 kb on - strand, within PfGW456L13_793at 894.361 kb on + strand, within PfGW456L13_793at 894.361 kb on + strand, within PfGW456L13_793at 894.457 kb on - strand, within PfGW456L13_793

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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892,599 + PfGW456L13_789 0.58 +1.7
892,599 + PfGW456L13_789 0.58 +1.3
892,600 - PfGW456L13_789 0.58 +0.1
892,600 - PfGW456L13_789 0.58 +1.1
892,600 - PfGW456L13_789 0.58 +1.4
892,600 - PfGW456L13_789 0.58 +1.3
892,708 + PfGW456L13_790 0.22 -0.5
892,708 + PfGW456L13_790 0.22 +1.1
892,708 + PfGW456L13_790 0.22 -1.8
892,709 - PfGW456L13_790 0.22 +0.7
892,709 - PfGW456L13_790 0.22 +1.1
892,715 + PfGW456L13_790 0.24 -2.8
892,716 - PfGW456L13_790 0.24 -0.9
892,797 - PfGW456L13_790 0.45 +0.9
892,797 - PfGW456L13_790 0.45 +2.0
893,169 + PfGW456L13_791 0.31 +0.5
893,169 + PfGW456L13_791 0.31 +0.6
893,169 + PfGW456L13_791 0.31 +0.5
893,170 - PfGW456L13_791 0.31 +1.5
893,312 + PfGW456L13_791 0.55 -0.9
893,346 + PfGW456L13_791 0.61 -3.0
893,346 + PfGW456L13_791 0.61 +1.2
893,346 + PfGW456L13_791 0.61 +0.2
893,347 - PfGW456L13_791 0.62 -0.9
893,347 - PfGW456L13_791 0.62 +0.7
893,347 - PfGW456L13_791 0.62 +0.3
893,347 - PfGW456L13_791 0.62 -0.1
893,347 - PfGW456L13_791 0.62 +1.7
893,347 - PfGW456L13_791 0.62 -0.0
893,361 + PfGW456L13_791 0.64 -0.4
893,361 + PfGW456L13_791 0.64 +1.9
893,361 + PfGW456L13_791 0.64 -1.8
893,361 + PfGW456L13_791 0.64 +0.1
893,362 - PfGW456L13_791 0.64 +0.3
893,430 + PfGW456L13_791 0.76 +0.0
893,430 + PfGW456L13_791 0.76 -0.5
893,430 + PfGW456L13_791 0.76 -0.7
893,430 + PfGW456L13_791 0.76 -0.4
893,431 - PfGW456L13_791 0.76 +0.1
893,431 - PfGW456L13_791 0.76 -2.9
893,431 - PfGW456L13_791 0.76 -1.7
893,453 + PfGW456L13_791 0.80 +1.7
893,455 + PfGW456L13_791 0.80 -1.2
893,455 + PfGW456L13_791 0.80 -0.0
893,455 + PfGW456L13_791 0.80 -3.4
893,455 + PfGW456L13_791 0.80 +0.7
893,455 + PfGW456L13_791 0.80 +0.5
893,455 + PfGW456L13_791 0.80 -0.8
893,455 + PfGW456L13_791 0.80 -1.4
893,455 + PfGW456L13_791 0.80 -0.3
893,455 + PfGW456L13_791 0.80 +0.7
893,455 + PfGW456L13_791 0.80 +2.9
893,455 + PfGW456L13_791 0.80 +0.8
893,455 + PfGW456L13_791 0.80 +1.2
893,455 + PfGW456L13_791 0.80 -1.6
893,456 - PfGW456L13_791 0.81 +1.9
893,456 - PfGW456L13_791 0.81 -0.2
893,456 - PfGW456L13_791 0.81 +0.5
893,456 - PfGW456L13_791 0.81 +1.1
893,456 - PfGW456L13_791 0.81 +0.7
893,456 - PfGW456L13_791 0.81 +1.0
893,456 - PfGW456L13_791 0.81 +0.4
893,456 - PfGW456L13_791 0.81 +1.2
893,456 - PfGW456L13_791 0.81 -1.4
893,456 - PfGW456L13_791 0.81 +1.4
893,456 - PfGW456L13_791 0.81 +0.1
893,456 - PfGW456L13_791 0.81 +0.6
893,462 + PfGW456L13_791 0.82 +0.1
893,463 - PfGW456L13_791 0.82 -1.1
893,690 + PfGW456L13_792 0.65 +1.3
893,690 + PfGW456L13_792 0.65 +0.9
893,690 + PfGW456L13_792 0.65 +0.7
893,691 - PfGW456L13_792 0.65 +0.3
893,691 - PfGW456L13_792 0.65 -0.9
893,691 - PfGW456L13_792 0.65 +0.5
893,691 - PfGW456L13_792 0.65 +2.7
893,691 - PfGW456L13_792 0.65 +0.2
893,691 - PfGW456L13_792 0.65 +0.2
893,786 + +1.8
893,786 + -0.3
893,786 + +0.6
893,786 + +1.2
893,786 + +2.2
893,786 + +1.5
893,796 + +0.9
893,796 + -0.5
893,797 - -0.1
893,797 - +0.2
893,797 - +1.3
893,797 - +1.2
893,797 - +1.4
893,797 - -1.1
893,797 - +1.3
893,797 - +0.3
893,849 + +1.2
893,849 + +0.7
893,849 + +0.8
893,849 + +0.4
893,850 - +0.9
893,850 - +1.1
893,878 + +0.8
893,878 + -0.7
893,878 + +0.1
893,879 - -1.1
893,879 - +1.7
893,895 + -1.3
893,895 + +0.4
893,896 - -2.4
893,917 - +0.3
893,945 + +1.2
893,987 + +0.9
893,988 - -1.4
893,988 - +0.7
893,995 + -0.5
893,996 - -0.3
894,021 + +1.5
894,196 + PfGW456L13_793 0.18 -2.2
894,196 + PfGW456L13_793 0.18 -2.4
894,196 + PfGW456L13_793 0.18 -2.1
894,197 - PfGW456L13_793 0.18 -3.0
894,361 + PfGW456L13_793 0.36 -3.8
894,361 + PfGW456L13_793 0.36 -3.1
894,457 - PfGW456L13_793 0.46 -1.6

Or see this region's nucleotide sequence