Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_600

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_598 and PfGW456L13_599 overlap by 1 nucleotidesPfGW456L13_599 and PfGW456L13_600 overlap by 8 nucleotidesPfGW456L13_600 and PfGW456L13_601 are separated by 37 nucleotides PfGW456L13_598 - Zinc uptake regulation protein ZUR, at 692,536 to 692,958 _598 PfGW456L13_599 - Zinc ABC transporter, ATP-binding protein ZnuC, at 692,958 to 693,743 _599 PfGW456L13_600 - Zinc ABC transporter, inner membrane permease protein ZnuB, at 693,736 to 694,524 _600 PfGW456L13_601 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 694,562 to 695,278 _601 Position (kb) 693 694 695Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 693.171 kb on + strand, within PfGW456L13_599at 693.171 kb on + strand, within PfGW456L13_599at 693.171 kb on + strand, within PfGW456L13_599at 693.172 kb on - strand, within PfGW456L13_599at 693.172 kb on - strand, within PfGW456L13_599at 693.349 kb on + strand, within PfGW456L13_599at 693.438 kb on + strand, within PfGW456L13_599at 693.439 kb on - strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.553 kb on + strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.554 kb on - strand, within PfGW456L13_599at 693.639 kb on + strand, within PfGW456L13_599at 693.639 kb on + strand, within PfGW456L13_599at 693.639 kb on + strand, within PfGW456L13_599at 693.640 kb on - strand, within PfGW456L13_599at 693.640 kb on - strand, within PfGW456L13_599at 693.640 kb on - strand, within PfGW456L13_599at 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.725 kb on + strandat 693.726 kb on - strandat 693.726 kb on - strandat 693.754 kb on + strandat 693.755 kb on - strandat 693.832 kb on + strand, within PfGW456L13_600at 693.832 kb on + strand, within PfGW456L13_600at 693.832 kb on + strand, within PfGW456L13_600at 694.034 kb on + strand, within PfGW456L13_600at 694.034 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.037 kb on + strand, within PfGW456L13_600at 694.038 kb on - strand, within PfGW456L13_600at 694.038 kb on - strand, within PfGW456L13_600at 694.038 kb on - strand, within PfGW456L13_600at 694.038 kb on - strand, within PfGW456L13_600at 694.075 kb on + strand, within PfGW456L13_600at 694.075 kb on + strand, within PfGW456L13_600at 694.076 kb on - strand, within PfGW456L13_600at 694.076 kb on - strand, within PfGW456L13_600at 694.076 kb on - strand, within PfGW456L13_600at 694.076 kb on - strand, within PfGW456L13_600at 694.076 kb on - strand, within PfGW456L13_600at 694.162 kb on - strand, within PfGW456L13_600at 694.271 kb on + strand, within PfGW456L13_600at 694.271 kb on + strand, within PfGW456L13_600at 694.272 kb on - strand, within PfGW456L13_600at 694.401 kb on - strand, within PfGW456L13_600at 694.409 kb on + strand, within PfGW456L13_600at 694.410 kb on - strand, within PfGW456L13_600at 694.485 kb on - strandat 694.522 kb on + strandat 694.522 kb on + strandat 694.522 kb on + strandat 694.522 kb on + strandat 694.523 kb on - strandat 694.548 kb on - strandat 694.548 kb on - strandat 694.583 kb on + strandat 694.680 kb on + strand, within PfGW456L13_601at 694.680 kb on + strand, within PfGW456L13_601at 694.680 kb on + strand, within PfGW456L13_601at 694.680 kb on + strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.681 kb on - strand, within PfGW456L13_601at 694.782 kb on - strand, within PfGW456L13_601at 694.782 kb on - strand, within PfGW456L13_601at 694.805 kb on + strand, within PfGW456L13_601at 694.805 kb on + strand, within PfGW456L13_601at 694.806 kb on - strand, within PfGW456L13_601at 694.806 kb on - strand, within PfGW456L13_601at 695.048 kb on - strand, within PfGW456L13_601at 695.057 kb on - strand, within PfGW456L13_601at 695.143 kb on + strand, within PfGW456L13_601at 695.143 kb on + strand, within PfGW456L13_601at 695.144 kb on - strand, within PfGW456L13_601at 695.150 kb on + strand, within PfGW456L13_601at 695.259 kb on + strandat 695.259 kb on + strandat 695.259 kb on + strandat 695.260 kb on - strandat 695.260 kb on - strandat 695.260 kb on - strandat 695.260 kb on - strandat 695.260 kb on - strandat 695.260 kb on - strandat 695.260 kb on - strandat 695.269 kb on + strandat 695.270 kb on - strandat 695.270 kb on - strandat 695.291 kb on + strandat 695.291 kb on + strandat 695.291 kb on + strandat 695.291 kb on + strandat 695.292 kb on - strandat 695.292 kb on - strandat 695.292 kb on - strandat 695.348 kb on + strandat 695.348 kb on + strandat 695.348 kb on + strandat 695.349 kb on - strandat 695.349 kb on - strandat 695.349 kb on - strandat 695.349 kb on - strandat 695.353 kb on + strandat 695.353 kb on + strandat 695.353 kb on + strandat 695.354 kb on - strandat 695.354 kb on - strandat 695.354 kb on - strandat 695.354 kb on - strandat 695.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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693,171 + PfGW456L13_599 0.27 +0.4
693,171 + PfGW456L13_599 0.27 -0.5
693,171 + PfGW456L13_599 0.27 -0.0
693,172 - PfGW456L13_599 0.27 +0.9
693,172 - PfGW456L13_599 0.27 -2.5
693,349 + PfGW456L13_599 0.50 -1.5
693,438 + PfGW456L13_599 0.61 -1.1
693,439 - PfGW456L13_599 0.61 -0.9
693,553 + PfGW456L13_599 0.76 +1.2
693,553 + PfGW456L13_599 0.76 +1.9
693,553 + PfGW456L13_599 0.76 -2.2
693,553 + PfGW456L13_599 0.76 -2.7
693,553 + PfGW456L13_599 0.76 -1.7
693,553 + PfGW456L13_599 0.76 -0.2
693,553 + PfGW456L13_599 0.76 -0.0
693,553 + PfGW456L13_599 0.76 -1.8
693,553 + PfGW456L13_599 0.76 -1.4
693,553 + PfGW456L13_599 0.76 -0.5
693,553 + PfGW456L13_599 0.76 -1.0
693,553 + PfGW456L13_599 0.76 -1.6
693,553 + PfGW456L13_599 0.76 -2.9
693,553 + PfGW456L13_599 0.76 +0.9
693,554 - PfGW456L13_599 0.76 -1.2
693,554 - PfGW456L13_599 0.76 -1.9
693,554 - PfGW456L13_599 0.76 +0.0
693,554 - PfGW456L13_599 0.76 -0.4
693,554 - PfGW456L13_599 0.76 -1.5
693,554 - PfGW456L13_599 0.76 -0.7
693,554 - PfGW456L13_599 0.76 -0.3
693,554 - PfGW456L13_599 0.76 -0.7
693,554 - PfGW456L13_599 0.76 -2.7
693,554 - PfGW456L13_599 0.76 -0.7
693,554 - PfGW456L13_599 0.76 -2.7
693,554 - PfGW456L13_599 0.76 +1.2
693,639 + PfGW456L13_599 0.87 -0.3
693,639 + PfGW456L13_599 0.87 -1.3
693,639 + PfGW456L13_599 0.87 -0.2
693,640 - PfGW456L13_599 0.87 -0.4
693,640 - PfGW456L13_599 0.87 +0.7
693,640 - PfGW456L13_599 0.87 +1.5
693,725 + +0.8
693,725 + -1.6
693,725 + -0.6
693,725 + -0.7
693,725 + -0.1
693,725 + -2.2
693,725 + +0.1
693,725 + -0.2
693,725 + -0.6
693,725 + -3.0
693,725 + -0.0
693,726 - -3.2
693,726 - -0.2
693,754 + -0.9
693,755 - -3.6
693,832 + PfGW456L13_600 0.12 -1.2
693,832 + PfGW456L13_600 0.12 -2.3
693,832 + PfGW456L13_600 0.12 -1.1
694,034 + PfGW456L13_600 0.38 -1.9
694,034 + PfGW456L13_600 0.38 -2.7
694,037 + PfGW456L13_600 0.38 -1.6
694,037 + PfGW456L13_600 0.38 -1.1
694,037 + PfGW456L13_600 0.38 -2.9
694,037 + PfGW456L13_600 0.38 +1.0
694,037 + PfGW456L13_600 0.38 -1.4
694,037 + PfGW456L13_600 0.38 +0.1
694,037 + PfGW456L13_600 0.38 -2.2
694,037 + PfGW456L13_600 0.38 -1.9
694,037 + PfGW456L13_600 0.38 -0.2
694,037 + PfGW456L13_600 0.38 -1.4
694,037 + PfGW456L13_600 0.38 -2.6
694,038 - PfGW456L13_600 0.38 -2.3
694,038 - PfGW456L13_600 0.38 -0.0
694,038 - PfGW456L13_600 0.38 -2.7
694,038 - PfGW456L13_600 0.38 -0.3
694,075 + PfGW456L13_600 0.43 -0.9
694,075 + PfGW456L13_600 0.43 -0.9
694,076 - PfGW456L13_600 0.43 -2.8
694,076 - PfGW456L13_600 0.43 +1.0
694,076 - PfGW456L13_600 0.43 -0.1
694,076 - PfGW456L13_600 0.43 -2.2
694,076 - PfGW456L13_600 0.43 -0.4
694,162 - PfGW456L13_600 0.54 +1.4
694,271 + PfGW456L13_600 0.68 -2.9
694,271 + PfGW456L13_600 0.68 -1.5
694,272 - PfGW456L13_600 0.68 -1.9
694,401 - PfGW456L13_600 0.84 -0.9
694,409 + PfGW456L13_600 0.85 -1.0
694,410 - PfGW456L13_600 0.85 -1.0
694,485 - +1.0
694,522 + -0.0
694,522 + -0.6
694,522 + -0.2
694,522 + -1.6
694,523 - -0.3
694,548 - -0.4
694,548 - +1.0
694,583 + -0.9
694,680 + PfGW456L13_601 0.16 +0.7
694,680 + PfGW456L13_601 0.16 -0.5
694,680 + PfGW456L13_601 0.16 -0.6
694,680 + PfGW456L13_601 0.16 -0.6
694,681 - PfGW456L13_601 0.17 -0.9
694,681 - PfGW456L13_601 0.17 -0.8
694,681 - PfGW456L13_601 0.17 -3.2
694,681 - PfGW456L13_601 0.17 -0.4
694,681 - PfGW456L13_601 0.17 +0.4
694,681 - PfGW456L13_601 0.17 -1.4
694,681 - PfGW456L13_601 0.17 +0.1
694,681 - PfGW456L13_601 0.17 +0.3
694,782 - PfGW456L13_601 0.31 -0.7
694,782 - PfGW456L13_601 0.31 -0.8
694,805 + PfGW456L13_601 0.34 +0.4
694,805 + PfGW456L13_601 0.34 -0.5
694,806 - PfGW456L13_601 0.34 -3.4
694,806 - PfGW456L13_601 0.34 -0.4
695,048 - PfGW456L13_601 0.68 -0.4
695,057 - PfGW456L13_601 0.69 -0.7
695,143 + PfGW456L13_601 0.81 -0.9
695,143 + PfGW456L13_601 0.81 -0.3
695,144 - PfGW456L13_601 0.81 +0.7
695,150 + PfGW456L13_601 0.82 -0.5
695,259 + +1.2
695,259 + +1.1
695,259 + -0.4
695,260 - +0.3
695,260 - -0.3
695,260 - -0.5
695,260 - -1.2
695,260 - -0.7
695,260 - +0.6
695,260 - +0.1
695,269 + +0.2
695,270 - +1.1
695,270 - -0.0
695,291 + +0.8
695,291 + -2.3
695,291 + -0.7
695,291 + -0.4
695,292 - +0.3
695,292 - -0.5
695,292 - +0.1
695,348 + +0.8
695,348 + -0.9
695,348 + -0.2
695,349 - +1.2
695,349 - +1.3
695,349 - +0.5
695,349 - +0.2
695,353 + -2.9
695,353 + -1.7
695,353 + +0.4
695,354 - -0.8
695,354 - -0.4
695,354 - -0.8
695,354 - -0.8
695,354 - +0.7

Or see this region's nucleotide sequence