Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_535

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_534 and PfGW456L13_535 are separated by 42 nucleotidesPfGW456L13_535 and PfGW456L13_536 are separated by 325 nucleotides PfGW456L13_534 - Type I secretion system ATPase, LssB family LapB, at 615,901 to 618,057 _534 PfGW456L13_535 - Type I secretion system, outer membrane component LapE, at 618,100 to 619,488 _535 PfGW456L13_536 - T1SS secreted agglutinin RTX, at 619,814 to 623,119 _536 Position (kb) 618 619 620Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 617.167 kb on - strand, within PfGW456L13_534at 617.335 kb on - strand, within PfGW456L13_534at 617.335 kb on - strand, within PfGW456L13_534at 617.335 kb on - strand, within PfGW456L13_534at 617.377 kb on - strand, within PfGW456L13_534at 617.377 kb on - strand, within PfGW456L13_534at 617.409 kb on - strand, within PfGW456L13_534at 617.409 kb on - strand, within PfGW456L13_534at 617.478 kb on - strand, within PfGW456L13_534at 617.478 kb on - strand, within PfGW456L13_534at 617.552 kb on + strand, within PfGW456L13_534at 617.552 kb on + strand, within PfGW456L13_534at 617.552 kb on + strand, within PfGW456L13_534at 617.553 kb on - strand, within PfGW456L13_534at 617.670 kb on - strand, within PfGW456L13_534at 617.670 kb on - strand, within PfGW456L13_534at 617.670 kb on - strand, within PfGW456L13_534at 617.823 kb on + strand, within PfGW456L13_534at 617.824 kb on - strand, within PfGW456L13_534at 617.824 kb on - strand, within PfGW456L13_534at 617.887 kb on + strandat 617.887 kb on + strandat 617.888 kb on - strandat 618.101 kb on + strandat 618.101 kb on + strandat 618.101 kb on + strandat 618.101 kb on + strandat 618.101 kb on + strandat 618.101 kb on + strandat 618.101 kb on + strandat 618.102 kb on - strandat 618.102 kb on - strandat 618.102 kb on - strandat 618.222 kb on + strandat 618.223 kb on - strandat 618.223 kb on - strandat 618.223 kb on - strandat 618.226 kb on + strandat 618.368 kb on + strand, within PfGW456L13_535at 618.368 kb on + strand, within PfGW456L13_535at 618.368 kb on + strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.369 kb on - strand, within PfGW456L13_535at 618.488 kb on + strand, within PfGW456L13_535at 618.489 kb on - strand, within PfGW456L13_535at 618.489 kb on - strand, within PfGW456L13_535at 618.530 kb on + strand, within PfGW456L13_535at 618.638 kb on + strand, within PfGW456L13_535at 618.662 kb on + strand, within PfGW456L13_535at 618.662 kb on + strand, within PfGW456L13_535at 618.662 kb on + strand, within PfGW456L13_535at 618.663 kb on - strand, within PfGW456L13_535at 618.663 kb on - strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.821 kb on + strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.822 kb on - strand, within PfGW456L13_535at 618.956 kb on + strand, within PfGW456L13_535at 618.956 kb on + strand, within PfGW456L13_535at 618.956 kb on + strand, within PfGW456L13_535at 618.957 kb on - strand, within PfGW456L13_535at 618.997 kb on + strand, within PfGW456L13_535at 618.998 kb on - strand, within PfGW456L13_535at 618.998 kb on - strand, within PfGW456L13_535at 619.028 kb on + strand, within PfGW456L13_535at 619.066 kb on - strand, within PfGW456L13_535at 619.066 kb on - strand, within PfGW456L13_535at 619.163 kb on - strand, within PfGW456L13_535at 619.163 kb on - strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.280 kb on + strand, within PfGW456L13_535at 619.281 kb on - strand, within PfGW456L13_535at 619.281 kb on - strand, within PfGW456L13_535at 619.281 kb on - strand, within PfGW456L13_535at 619.307 kb on + strand, within PfGW456L13_535at 619.384 kb on + strandat 619.426 kb on + strandat 619.426 kb on + strandat 619.426 kb on + strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.427 kb on - strandat 619.455 kb on + strandat 619.534 kb on + strandat 619.534 kb on + strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.535 kb on - strandat 619.570 kb on + strandat 619.570 kb on + strandat 619.570 kb on + strandat 619.570 kb on + strandat 619.571 kb on - strandat 619.626 kb on - strandat 619.722 kb on + strandat 619.722 kb on + strandat 619.723 kb on - strandat 619.723 kb on - strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.734 kb on + strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 619.735 kb on - strandat 620.073 kb on + strandat 620.073 kb on + strandat 620.074 kb on - strandat 620.323 kb on + strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.324 kb on - strand, within PfGW456L13_536at 620.335 kb on + strand, within PfGW456L13_536at 620.405 kb on + strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536at 620.406 kb on - strand, within PfGW456L13_536

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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617,167 - PfGW456L13_534 0.59 +0.7
617,335 - PfGW456L13_534 0.66 +0.1
617,335 - PfGW456L13_534 0.66 -0.9
617,335 - PfGW456L13_534 0.66 +1.1
617,377 - PfGW456L13_534 0.68 +2.3
617,377 - PfGW456L13_534 0.68 +0.4
617,409 - PfGW456L13_534 0.70 +0.1
617,409 - PfGW456L13_534 0.70 +0.9
617,478 - PfGW456L13_534 0.73 +0.5
617,478 - PfGW456L13_534 0.73 +0.1
617,552 + PfGW456L13_534 0.77 +0.1
617,552 + PfGW456L13_534 0.77 +0.4
617,552 + PfGW456L13_534 0.77 +0.6
617,553 - PfGW456L13_534 0.77 +1.3
617,670 - PfGW456L13_534 0.82 -1.3
617,670 - PfGW456L13_534 0.82 +1.3
617,670 - PfGW456L13_534 0.82 +0.7
617,823 + PfGW456L13_534 0.89 -1.1
617,824 - PfGW456L13_534 0.89 +0.1
617,824 - PfGW456L13_534 0.89 -1.7
617,887 + -0.1
617,887 + +0.1
617,888 - +1.0
618,101 + +2.1
618,101 + -1.3
618,101 + +0.5
618,101 + +0.4
618,101 + +0.4
618,101 + +1.6
618,101 + +0.4
618,102 - -0.0
618,102 - -3.0
618,102 - -1.0
618,222 + -0.3
618,223 - +0.6
618,223 - +0.9
618,223 - +1.3
618,226 + -0.3
618,368 + PfGW456L13_535 0.19 +0.2
618,368 + PfGW456L13_535 0.19 -0.9
618,368 + PfGW456L13_535 0.19 +0.4
618,369 - PfGW456L13_535 0.19 -0.4
618,369 - PfGW456L13_535 0.19 +2.2
618,369 - PfGW456L13_535 0.19 -1.1
618,369 - PfGW456L13_535 0.19 +0.9
618,369 - PfGW456L13_535 0.19 -1.5
618,369 - PfGW456L13_535 0.19 +0.3
618,369 - PfGW456L13_535 0.19 -0.1
618,369 - PfGW456L13_535 0.19 -2.0
618,488 + PfGW456L13_535 0.28 -0.4
618,489 - PfGW456L13_535 0.28 -0.7
618,489 - PfGW456L13_535 0.28 +1.2
618,530 + PfGW456L13_535 0.31 -0.9
618,638 + PfGW456L13_535 0.39 +0.8
618,662 + PfGW456L13_535 0.40 -1.5
618,662 + PfGW456L13_535 0.40 -1.4
618,662 + PfGW456L13_535 0.40 -2.7
618,663 - PfGW456L13_535 0.41 -0.5
618,663 - PfGW456L13_535 0.41 +0.4
618,821 + PfGW456L13_535 0.52 -1.6
618,821 + PfGW456L13_535 0.52 -2.1
618,821 + PfGW456L13_535 0.52 +1.0
618,821 + PfGW456L13_535 0.52 -0.1
618,821 + PfGW456L13_535 0.52 +1.1
618,821 + PfGW456L13_535 0.52 -1.4
618,822 - PfGW456L13_535 0.52 +1.4
618,822 - PfGW456L13_535 0.52 +0.1
618,822 - PfGW456L13_535 0.52 -4.5
618,822 - PfGW456L13_535 0.52 +1.4
618,822 - PfGW456L13_535 0.52 -0.0
618,822 - PfGW456L13_535 0.52 -0.0
618,822 - PfGW456L13_535 0.52 +0.0
618,956 + PfGW456L13_535 0.62 -3.0
618,956 + PfGW456L13_535 0.62 +0.9
618,956 + PfGW456L13_535 0.62 +0.1
618,957 - PfGW456L13_535 0.62 -0.5
618,997 + PfGW456L13_535 0.65 -0.4
618,998 - PfGW456L13_535 0.65 +0.3
618,998 - PfGW456L13_535 0.65 -0.2
619,028 + PfGW456L13_535 0.67 +0.3
619,066 - PfGW456L13_535 0.70 -1.1
619,066 - PfGW456L13_535 0.70 +0.4
619,163 - PfGW456L13_535 0.77 +1.0
619,163 - PfGW456L13_535 0.77 -0.6
619,280 + PfGW456L13_535 0.85 -0.6
619,280 + PfGW456L13_535 0.85 +1.1
619,280 + PfGW456L13_535 0.85 +0.8
619,280 + PfGW456L13_535 0.85 -0.7
619,280 + PfGW456L13_535 0.85 +0.4
619,281 - PfGW456L13_535 0.85 -0.9
619,281 - PfGW456L13_535 0.85 +1.5
619,281 - PfGW456L13_535 0.85 -0.8
619,307 + PfGW456L13_535 0.87 -0.1
619,384 + +1.5
619,426 + -1.0
619,426 + -0.7
619,426 + -0.5
619,427 - -1.3
619,427 - +1.9
619,427 - -0.9
619,427 - +0.4
619,427 - +0.9
619,455 + +1.0
619,534 + +0.7
619,534 + +0.4
619,535 - -0.6
619,535 - -2.2
619,535 - -0.8
619,535 - -1.3
619,535 - -0.8
619,570 + +1.1
619,570 + +0.4
619,570 + +0.7
619,570 + -1.6
619,571 - -1.1
619,626 - +0.6
619,722 + +0.7
619,722 + -0.5
619,723 - -3.4
619,723 - +1.4
619,734 + -0.9
619,734 + -0.1
619,734 + +0.1
619,734 + -1.1
619,734 + -0.0
619,734 + +1.1
619,734 + -0.0
619,734 + +0.1
619,734 + -2.5
619,734 + +1.1
619,734 + -1.3
619,735 - +3.9
619,735 - +0.3
619,735 - -1.4
619,735 - +0.8
619,735 - +1.7
619,735 - +0.8
619,735 - -0.8
619,735 - +0.7
620,073 + -2.1
620,073 + +1.0
620,074 - +0.2
620,323 + PfGW456L13_536 0.15 +0.1
620,324 - PfGW456L13_536 0.15 -0.7
620,324 - PfGW456L13_536 0.15 -0.6
620,324 - PfGW456L13_536 0.15 +0.6
620,324 - PfGW456L13_536 0.15 +1.9
620,324 - PfGW456L13_536 0.15 -0.3
620,324 - PfGW456L13_536 0.15 +0.4
620,335 + PfGW456L13_536 0.16 +1.0
620,405 + PfGW456L13_536 0.18 +0.7
620,406 - PfGW456L13_536 0.18 +1.9
620,406 - PfGW456L13_536 0.18 +0.5
620,406 - PfGW456L13_536 0.18 +0.0
620,406 - PfGW456L13_536 0.18 -0.1

Or see this region's nucleotide sequence