Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5151

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5150 and PfGW456L13_5151 overlap by 4 nucleotidesPfGW456L13_5151 and PfGW456L13_5152 overlap by 1 nucleotides PfGW456L13_5150 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 5,745,835 to 5,747,928 _5150 PfGW456L13_5151 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 5,747,925 to 5,751,614 _5151 PfGW456L13_5152 - Exodeoxyribonuclease V gamma chain (EC 3.1.11.5), at 5,751,614 to 5,755,063 _5152 Position (kb) 5747 5748 5749 5750 5751 5752Strain fitness (log2 ratio) -1 0 1 2 3 4at 5747.928 kb on + strandat 5747.928 kb on + strandat 5747.929 kb on - strandat 5747.929 kb on - strandat 5747.929 kb on - strandat 5747.934 kb on + strandat 5747.934 kb on + strandat 5747.934 kb on + strandat 5747.935 kb on - strandat 5747.935 kb on - strandat 5748.905 kb on - strand, within PfGW456L13_5151at 5748.905 kb on - strand, within PfGW456L13_5151at 5748.938 kb on - strand, within PfGW456L13_5151at 5750.296 kb on + strand, within PfGW456L13_5151

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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5,747,928 + -0.2
5,747,928 + -1.0
5,747,929 - +1.1
5,747,929 - +3.9
5,747,929 - -0.5
5,747,934 + +0.5
5,747,934 + +0.0
5,747,934 + +0.3
5,747,935 - -0.3
5,747,935 - +1.2
5,748,905 - PfGW456L13_5151 0.27 +0.7
5,748,905 - PfGW456L13_5151 0.27 +1.2
5,748,938 - PfGW456L13_5151 0.27 +1.2
5,750,296 + PfGW456L13_5151 0.64 +0.2

Or see this region's nucleotide sequence