Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4731

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4730 and PfGW456L13_4731 are separated by 6 nucleotidesPfGW456L13_4731 and PfGW456L13_4732 are separated by 93 nucleotidesPfGW456L13_4732 and PfGW456L13_4733 are separated by 112 nucleotides PfGW456L13_4730 - RND efflux transporter, at 5,271,878 to 5,274,943 _4730 PfGW456L13_4731 - RND efflux membrane fusion protein, at 5,274,950 to 5,276,050 _4731 PfGW456L13_4732 - Transcriptional regulator, TetR family, at 5,276,144 to 5,276,782 _4732 PfGW456L13_4733 - SAM-dependent methyltransferase (EC 2.1.1.-), at 5,276,895 to 5,277,677 _4733 Position (kb) 5274 5275 5276 5277Strain fitness (log2 ratio) -2 -1 0 1 2at 5274.511 kb on - strand, within PfGW456L13_4730at 5274.515 kb on - strand, within PfGW456L13_4730at 5274.515 kb on - strand, within PfGW456L13_4730at 5274.577 kb on + strand, within PfGW456L13_4730at 5274.578 kb on - strand, within PfGW456L13_4730at 5274.911 kb on - strandat 5274.951 kb on + strandat 5274.951 kb on + strandat 5274.951 kb on + strandat 5274.952 kb on - strandat 5274.952 kb on - strandat 5274.952 kb on - strandat 5275.074 kb on - strand, within PfGW456L13_4731at 5275.155 kb on + strand, within PfGW456L13_4731at 5275.155 kb on + strand, within PfGW456L13_4731at 5275.155 kb on + strand, within PfGW456L13_4731at 5275.155 kb on + strand, within PfGW456L13_4731at 5275.155 kb on + strand, within PfGW456L13_4731at 5275.155 kb on + strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.156 kb on - strand, within PfGW456L13_4731at 5275.555 kb on - strand, within PfGW456L13_4731at 5275.555 kb on - strand, within PfGW456L13_4731at 5275.624 kb on - strand, within PfGW456L13_4731at 5275.686 kb on + strand, within PfGW456L13_4731at 5275.687 kb on - strand, within PfGW456L13_4731at 5275.905 kb on + strand, within PfGW456L13_4731at 5276.000 kb on + strandat 5276.040 kb on + strandat 5276.083 kb on + strandat 5276.083 kb on + strandat 5276.084 kb on - strandat 5276.088 kb on - strandat 5276.088 kb on - strandat 5276.088 kb on - strandat 5276.090 kb on - strandat 5276.099 kb on + strandat 5276.099 kb on + strandat 5276.100 kb on - strandat 5276.100 kb on - strandat 5276.100 kb on - strandat 5276.100 kb on - strandat 5276.104 kb on + strandat 5276.133 kb on + strandat 5276.144 kb on - strandat 5276.144 kb on - strandat 5276.242 kb on + strand, within PfGW456L13_4732at 5276.257 kb on + strand, within PfGW456L13_4732at 5276.257 kb on + strand, within PfGW456L13_4732at 5276.309 kb on + strand, within PfGW456L13_4732at 5276.309 kb on + strand, within PfGW456L13_4732at 5276.309 kb on + strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.310 kb on - strand, within PfGW456L13_4732at 5276.311 kb on + strand, within PfGW456L13_4732at 5276.690 kb on + strand, within PfGW456L13_4732at 5276.690 kb on + strand, within PfGW456L13_4732at 5276.690 kb on + strand, within PfGW456L13_4732at 5276.691 kb on - strand, within PfGW456L13_4732at 5276.691 kb on - strand, within PfGW456L13_4732at 5276.758 kb on + strandat 5276.758 kb on + strandat 5276.759 kb on - strandat 5276.759 kb on - strandat 5276.920 kb on + strandat 5276.920 kb on + strandat 5276.920 kb on + strandat 5276.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
5,274,511 - PfGW456L13_4730 0.86 +0.3
5,274,515 - PfGW456L13_4730 0.86 +0.9
5,274,515 - PfGW456L13_4730 0.86 -0.4
5,274,577 + PfGW456L13_4730 0.88 -1.5
5,274,578 - PfGW456L13_4730 0.88 -2.6
5,274,911 - -0.9
5,274,951 + +0.1
5,274,951 + +0.7
5,274,951 + -0.1
5,274,952 - +0.4
5,274,952 - -0.5
5,274,952 - -0.7
5,275,074 - PfGW456L13_4731 0.11 +0.8
5,275,155 + PfGW456L13_4731 0.19 -1.1
5,275,155 + PfGW456L13_4731 0.19 +1.1
5,275,155 + PfGW456L13_4731 0.19 -0.9
5,275,155 + PfGW456L13_4731 0.19 +0.7
5,275,155 + PfGW456L13_4731 0.19 +0.2
5,275,155 + PfGW456L13_4731 0.19 -1.8
5,275,156 - PfGW456L13_4731 0.19 -0.6
5,275,156 - PfGW456L13_4731 0.19 -0.5
5,275,156 - PfGW456L13_4731 0.19 +0.8
5,275,156 - PfGW456L13_4731 0.19 +0.4
5,275,156 - PfGW456L13_4731 0.19 -1.1
5,275,156 - PfGW456L13_4731 0.19 +0.2
5,275,156 - PfGW456L13_4731 0.19 -1.3
5,275,156 - PfGW456L13_4731 0.19 +1.1
5,275,156 - PfGW456L13_4731 0.19 +1.9
5,275,156 - PfGW456L13_4731 0.19 +0.2
5,275,156 - PfGW456L13_4731 0.19 -1.2
5,275,156 - PfGW456L13_4731 0.19 +0.1
5,275,156 - PfGW456L13_4731 0.19 -1.1
5,275,156 - PfGW456L13_4731 0.19 +0.2
5,275,555 - PfGW456L13_4731 0.55 +1.0
5,275,555 - PfGW456L13_4731 0.55 -0.2
5,275,624 - PfGW456L13_4731 0.61 -2.2
5,275,686 + PfGW456L13_4731 0.67 +1.3
5,275,687 - PfGW456L13_4731 0.67 +0.5
5,275,905 + PfGW456L13_4731 0.87 +0.7
5,276,000 + +0.6
5,276,040 + -2.1
5,276,083 + +1.2
5,276,083 + +0.5
5,276,084 - +0.4
5,276,088 - +0.4
5,276,088 - +1.5
5,276,088 - -0.5
5,276,090 - -0.8
5,276,099 + -0.9
5,276,099 + -0.2
5,276,100 - +1.2
5,276,100 - +0.4
5,276,100 - +0.9
5,276,100 - +1.2
5,276,104 + +0.9
5,276,133 + +0.3
5,276,144 - -2.3
5,276,144 - +0.8
5,276,242 + PfGW456L13_4732 0.15 -1.3
5,276,257 + PfGW456L13_4732 0.18 -1.6
5,276,257 + PfGW456L13_4732 0.18 +1.3
5,276,309 + PfGW456L13_4732 0.26 +0.2
5,276,309 + PfGW456L13_4732 0.26 +1.2
5,276,309 + PfGW456L13_4732 0.26 -0.8
5,276,310 - PfGW456L13_4732 0.26 +0.3
5,276,310 - PfGW456L13_4732 0.26 +0.8
5,276,310 - PfGW456L13_4732 0.26 -1.2
5,276,310 - PfGW456L13_4732 0.26 +2.4
5,276,310 - PfGW456L13_4732 0.26 +0.6
5,276,311 + PfGW456L13_4732 0.26 -0.5
5,276,690 + PfGW456L13_4732 0.85 -0.4
5,276,690 + PfGW456L13_4732 0.85 -0.9
5,276,690 + PfGW456L13_4732 0.85 +0.1
5,276,691 - PfGW456L13_4732 0.86 +0.4
5,276,691 - PfGW456L13_4732 0.86 -0.9
5,276,758 + -2.4
5,276,758 + -0.2
5,276,759 - +0.7
5,276,759 - -0.7
5,276,920 + +0.8
5,276,920 + -1.9
5,276,920 + -1.2
5,276,921 - +0.8

Or see this region's nucleotide sequence