Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_473

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_472 and PfGW456L13_473 are separated by 134 nucleotidesPfGW456L13_473 and PfGW456L13_474 are separated by 168 nucleotides PfGW456L13_472 - Outer membrane receptor proteins, mostly Fe transport, at 540,116 to 542,476 _472 PfGW456L13_473 - Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17), at 542,611 to 543,531 _473 PfGW456L13_474 - LysR family transcriptional regulator PA0191, at 543,700 to 544,635 _474 Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 541.632 kb on + strand, within PfGW456L13_472at 541.632 kb on + strand, within PfGW456L13_472at 541.632 kb on + strand, within PfGW456L13_472at 541.632 kb on + strand, within PfGW456L13_472at 541.633 kb on - strand, within PfGW456L13_472at 541.671 kb on + strand, within PfGW456L13_472at 541.872 kb on + strand, within PfGW456L13_472at 541.872 kb on + strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 541.873 kb on - strand, within PfGW456L13_472at 542.031 kb on - strand, within PfGW456L13_472at 542.055 kb on + strand, within PfGW456L13_472at 542.070 kb on + strand, within PfGW456L13_472at 542.070 kb on + strand, within PfGW456L13_472at 542.070 kb on + strand, within PfGW456L13_472at 542.071 kb on - strand, within PfGW456L13_472at 542.071 kb on - strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.157 kb on + strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.158 kb on - strand, within PfGW456L13_472at 542.376 kb on + strandat 542.376 kb on + strandat 542.376 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.476 kb on + strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.477 kb on - strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.499 kb on + strandat 542.500 kb on - strandat 542.500 kb on - strandat 542.500 kb on - strandat 542.723 kb on + strand, within PfGW456L13_473at 542.724 kb on - strand, within PfGW456L13_473at 542.739 kb on - strand, within PfGW456L13_473at 542.867 kb on + strand, within PfGW456L13_473at 542.958 kb on - strand, within PfGW456L13_473at 543.029 kb on + strand, within PfGW456L13_473at 543.035 kb on + strand, within PfGW456L13_473at 543.035 kb on + strand, within PfGW456L13_473at 543.036 kb on - strand, within PfGW456L13_473at 543.036 kb on - strand, within PfGW456L13_473at 543.101 kb on + strand, within PfGW456L13_473at 543.102 kb on - strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.377 kb on + strand, within PfGW456L13_473at 543.378 kb on - strand, within PfGW456L13_473at 543.439 kb on + strandat 543.439 kb on + strand, within PfGW456L13_473at 543.439 kb on + strand, within PfGW456L13_473at 543.440 kb on - strandat 543.440 kb on - strandat 543.508 kb on + strandat 543.508 kb on + strandat 543.508 kb on + strandat 543.509 kb on - strandat 543.536 kb on - strandat 543.651 kb on + strandat 543.651 kb on + strandat 543.651 kb on + strandat 543.696 kb on + strandat 543.714 kb on + strandat 543.715 kb on - strandat 543.715 kb on - strandat 543.715 kb on - strandat 543.736 kb on + strandat 543.736 kb on + strandat 543.737 kb on - strandat 543.795 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.511 kb on + strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474at 544.512 kb on - strand, within PfGW456L13_474

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
541,632 + PfGW456L13_472 0.64 -0.1
541,632 + PfGW456L13_472 0.64 -0.1
541,632 + PfGW456L13_472 0.64 +1.0
541,632 + PfGW456L13_472 0.64 -0.7
541,633 - PfGW456L13_472 0.64 +1.6
541,671 + PfGW456L13_472 0.66 +1.3
541,872 + PfGW456L13_472 0.74 -0.5
541,872 + PfGW456L13_472 0.74 -2.3
541,873 - PfGW456L13_472 0.74 -3.2
541,873 - PfGW456L13_472 0.74 -1.3
541,873 - PfGW456L13_472 0.74 +2.3
541,873 - PfGW456L13_472 0.74 -1.6
542,031 - PfGW456L13_472 0.81 -0.4
542,055 + PfGW456L13_472 0.82 -0.2
542,070 + PfGW456L13_472 0.83 +0.3
542,070 + PfGW456L13_472 0.83 -1.2
542,070 + PfGW456L13_472 0.83 -0.5
542,071 - PfGW456L13_472 0.83 +1.6
542,071 - PfGW456L13_472 0.83 +0.7
542,157 + PfGW456L13_472 0.86 -0.7
542,157 + PfGW456L13_472 0.86 -1.2
542,157 + PfGW456L13_472 0.86 -0.1
542,157 + PfGW456L13_472 0.86 +1.2
542,157 + PfGW456L13_472 0.86 +0.9
542,157 + PfGW456L13_472 0.86 -0.9
542,157 + PfGW456L13_472 0.86 -2.3
542,157 + PfGW456L13_472 0.86 -1.1
542,157 + PfGW456L13_472 0.86 -2.2
542,157 + PfGW456L13_472 0.86 -1.4
542,157 + PfGW456L13_472 0.86 -1.6
542,158 - PfGW456L13_472 0.86 -1.8
542,158 - PfGW456L13_472 0.86 -1.2
542,158 - PfGW456L13_472 0.86 -0.1
542,158 - PfGW456L13_472 0.86 +0.9
542,376 + -1.7
542,376 + +0.7
542,376 + +0.5
542,476 + +0.3
542,476 + +0.1
542,476 + +1.3
542,476 + +0.4
542,476 + +0.2
542,476 + -0.4
542,477 - -0.2
542,477 - +1.3
542,477 - +0.2
542,477 - -0.6
542,477 - -0.8
542,499 + -2.9
542,499 + +0.3
542,499 + -2.0
542,499 + +0.1
542,499 + +0.5
542,499 + -2.2
542,499 + -0.7
542,500 - -1.8
542,500 - -0.2
542,500 - -0.2
542,723 + PfGW456L13_473 0.12 +1.2
542,724 - PfGW456L13_473 0.12 +0.6
542,739 - PfGW456L13_473 0.14 +0.5
542,867 + PfGW456L13_473 0.28 -0.6
542,958 - PfGW456L13_473 0.38 -0.1
543,029 + PfGW456L13_473 0.45 +0.0
543,035 + PfGW456L13_473 0.46 -1.3
543,035 + PfGW456L13_473 0.46 -0.1
543,036 - PfGW456L13_473 0.46 +0.1
543,036 - PfGW456L13_473 0.46 +0.6
543,101 + PfGW456L13_473 0.53 -2.1
543,102 - PfGW456L13_473 0.53 -0.1
543,377 + PfGW456L13_473 0.83 +0.7
543,377 + PfGW456L13_473 0.83 +0.8
543,377 + PfGW456L13_473 0.83 +0.9
543,377 + PfGW456L13_473 0.83 -0.6
543,377 + PfGW456L13_473 0.83 +0.3
543,377 + PfGW456L13_473 0.83 -1.5
543,377 + PfGW456L13_473 0.83 -0.2
543,378 - PfGW456L13_473 0.83 +1.0
543,439 + +1.4
543,439 + PfGW456L13_473 0.90 +0.3
543,439 + PfGW456L13_473 0.90 +1.3
543,440 - -0.5
543,440 - +1.4
543,508 + -0.5
543,508 + -0.1
543,508 + +0.5
543,509 - -0.4
543,536 - -1.6
543,651 + +0.7
543,651 + +0.7
543,651 + +0.8
543,696 + -1.4
543,714 + +0.6
543,715 - +0.1
543,715 - -3.3
543,715 - +1.0
543,736 + -0.3
543,736 + +1.3
543,737 - -0.8
543,795 + PfGW456L13_474 0.10 +0.4
544,511 + PfGW456L13_474 0.87 -1.3
544,511 + PfGW456L13_474 0.87 -2.0
544,511 + PfGW456L13_474 0.87 -0.7
544,511 + PfGW456L13_474 0.87 +2.4
544,512 - PfGW456L13_474 0.87 +0.4
544,512 - PfGW456L13_474 0.87 -0.9
544,512 - PfGW456L13_474 0.87 -0.8
544,512 - PfGW456L13_474 0.87 +0.5

Or see this region's nucleotide sequence