Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4679

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4677 and PfGW456L13_4678 overlap by 1 nucleotidesPfGW456L13_4678 and PfGW456L13_4679 overlap by 13 nucleotidesPfGW456L13_4679 and PfGW456L13_4680 overlap by 4 nucleotidesPfGW456L13_4680 and PfGW456L13_4681 are separated by 43 nucleotides PfGW456L13_4677 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 5,215,598 to 5,216,275 _4677 PfGW456L13_4678 - 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11), at 5,216,275 to 5,217,024 _4678 PfGW456L13_4679 - tRNA pseudouridine 13 synthase (EC 4.2.1.-), at 5,217,012 to 5,218,070 _4679 PfGW456L13_4680 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12), at 5,218,067 to 5,218,540 _4680 PfGW456L13_4681 - S-formylglutathione hydrolase (EC 3.1.2.12), at 5,218,584 to 5,219,429 _4681 Position (kb) 5217 5218 5219Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.097 kb on + strand, within PfGW456L13_4677at 5216.097 kb on + strand, within PfGW456L13_4677at 5216.097 kb on + strand, within PfGW456L13_4677at 5216.098 kb on - strand, within PfGW456L13_4677at 5216.190 kb on + strand, within PfGW456L13_4677at 5216.254 kb on + strandat 5216.254 kb on + strandat 5216.255 kb on - strandat 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.361 kb on - strand, within PfGW456L13_4678at 5216.361 kb on - strand, within PfGW456L13_4678at 5216.361 kb on - strand, within PfGW456L13_4678at 5216.558 kb on - strand, within PfGW456L13_4678at 5216.638 kb on + strand, within PfGW456L13_4678at 5216.638 kb on + strand, within PfGW456L13_4678at 5216.639 kb on - strand, within PfGW456L13_4678at 5216.639 kb on - strand, within PfGW456L13_4678at 5216.639 kb on - strand, within PfGW456L13_4678at 5216.721 kb on - strand, within PfGW456L13_4678at 5216.844 kb on + strand, within PfGW456L13_4678at 5216.949 kb on - strand, within PfGW456L13_4678at 5216.966 kb on + strandat 5216.966 kb on + strandat 5216.966 kb on + strandat 5216.966 kb on + strandat 5216.967 kb on - strandat 5216.967 kb on - strandat 5216.967 kb on - strandat 5217.007 kb on - strandat 5217.018 kb on + strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.076 kb on - strandat 5217.076 kb on - strandat 5217.462 kb on - strand, within PfGW456L13_4679at 5217.589 kb on + strand, within PfGW456L13_4679at 5217.589 kb on + strand, within PfGW456L13_4679at 5217.589 kb on + strand, within PfGW456L13_4679at 5217.590 kb on - strand, within PfGW456L13_4679at 5217.590 kb on - strand, within PfGW456L13_4679at 5217.608 kb on + strand, within PfGW456L13_4679at 5217.844 kb on + strand, within PfGW456L13_4679at 5217.844 kb on + strand, within PfGW456L13_4679at 5217.845 kb on - strand, within PfGW456L13_4679at 5218.036 kb on + strandat 5218.037 kb on - strandat 5218.577 kb on - strandat 5218.577 kb on - strandat 5218.577 kb on - strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.648 kb on + strandat 5218.649 kb on - strandat 5218.649 kb on - strandat 5218.649 kb on - strandat 5218.649 kb on - strandat 5218.649 kb on - strandat 5218.855 kb on + strand, within PfGW456L13_4681at 5218.930 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.056 kb on + strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681at 5219.057 kb on - strand, within PfGW456L13_4681

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
5,216,044 + PfGW456L13_4677 0.66 -0.7
5,216,044 + PfGW456L13_4677 0.66 -1.9
5,216,044 + PfGW456L13_4677 0.66 +0.2
5,216,044 + PfGW456L13_4677 0.66 -2.1
5,216,044 + PfGW456L13_4677 0.66 +0.7
5,216,044 + PfGW456L13_4677 0.66 -0.9
5,216,044 + PfGW456L13_4677 0.66 -1.5
5,216,044 + PfGW456L13_4677 0.66 -0.2
5,216,044 + PfGW456L13_4677 0.66 -0.4
5,216,044 + PfGW456L13_4677 0.66 -0.3
5,216,044 + PfGW456L13_4677 0.66 -1.3
5,216,044 + PfGW456L13_4677 0.66 -2.3
5,216,044 + PfGW456L13_4677 0.66 -0.4
5,216,044 + PfGW456L13_4677 0.66 +1.6
5,216,044 + PfGW456L13_4677 0.66 -1.7
5,216,044 + PfGW456L13_4677 0.66 -0.1
5,216,044 + PfGW456L13_4677 0.66 -0.4
5,216,045 - PfGW456L13_4677 0.66 -1.6
5,216,045 - PfGW456L13_4677 0.66 +0.1
5,216,045 - PfGW456L13_4677 0.66 -1.5
5,216,045 - PfGW456L13_4677 0.66 -1.3
5,216,045 - PfGW456L13_4677 0.66 -1.2
5,216,045 - PfGW456L13_4677 0.66 -2.8
5,216,045 - PfGW456L13_4677 0.66 -1.6
5,216,045 - PfGW456L13_4677 0.66 +0.1
5,216,045 - PfGW456L13_4677 0.66 -0.4
5,216,045 - PfGW456L13_4677 0.66 -4.3
5,216,045 - PfGW456L13_4677 0.66 -0.3
5,216,045 - PfGW456L13_4677 0.66 -1.5
5,216,046 + PfGW456L13_4677 0.66 -0.2
5,216,046 + PfGW456L13_4677 0.66 -1.5
5,216,046 + PfGW456L13_4677 0.66 -0.7
5,216,046 + PfGW456L13_4677 0.66 -0.3
5,216,046 + PfGW456L13_4677 0.66 +0.2
5,216,046 + PfGW456L13_4677 0.66 -1.7
5,216,046 + PfGW456L13_4677 0.66 +0.5
5,216,046 + PfGW456L13_4677 0.66 +1.5
5,216,046 + PfGW456L13_4677 0.66 +0.6
5,216,046 + PfGW456L13_4677 0.66 -0.1
5,216,046 + PfGW456L13_4677 0.66 +0.1
5,216,046 + PfGW456L13_4677 0.66 -2.1
5,216,046 + PfGW456L13_4677 0.66 +0.9
5,216,046 + PfGW456L13_4677 0.66 +0.2
5,216,046 + PfGW456L13_4677 0.66 -1.9
5,216,046 + PfGW456L13_4677 0.66 +0.2
5,216,046 + PfGW456L13_4677 0.66 -0.2
5,216,046 + PfGW456L13_4677 0.66 -0.7
5,216,046 + PfGW456L13_4677 0.66 -0.1
5,216,046 + PfGW456L13_4677 0.66 +1.7
5,216,046 + PfGW456L13_4677 0.66 -0.3
5,216,046 + PfGW456L13_4677 0.66 -3.1
5,216,046 + PfGW456L13_4677 0.66 -1.7
5,216,046 + PfGW456L13_4677 0.66 -0.0
5,216,046 + PfGW456L13_4677 0.66 -2.7
5,216,046 + PfGW456L13_4677 0.66 +0.5
5,216,046 + PfGW456L13_4677 0.66 +0.0
5,216,047 - PfGW456L13_4677 0.66 -2.4
5,216,047 - PfGW456L13_4677 0.66 -3.2
5,216,047 - PfGW456L13_4677 0.66 +0.3
5,216,047 - PfGW456L13_4677 0.66 +2.3
5,216,047 - PfGW456L13_4677 0.66 -0.8
5,216,047 - PfGW456L13_4677 0.66 -0.5
5,216,047 - PfGW456L13_4677 0.66 +0.5
5,216,047 - PfGW456L13_4677 0.66 +1.5
5,216,047 - PfGW456L13_4677 0.66 -1.6
5,216,047 - PfGW456L13_4677 0.66 +1.3
5,216,047 - PfGW456L13_4677 0.66 -2.9
5,216,047 - PfGW456L13_4677 0.66 -0.1
5,216,047 - PfGW456L13_4677 0.66 +2.2
5,216,047 - PfGW456L13_4677 0.66 -0.2
5,216,047 - PfGW456L13_4677 0.66 -0.4
5,216,047 - PfGW456L13_4677 0.66 -2.6
5,216,047 - PfGW456L13_4677 0.66 -1.0
5,216,047 - PfGW456L13_4677 0.66 -2.9
5,216,047 - PfGW456L13_4677 0.66 +0.0
5,216,047 - PfGW456L13_4677 0.66 +0.6
5,216,097 + PfGW456L13_4677 0.74 +1.2
5,216,097 + PfGW456L13_4677 0.74 +0.9
5,216,097 + PfGW456L13_4677 0.74 -0.4
5,216,098 - PfGW456L13_4677 0.74 -2.1
5,216,190 + PfGW456L13_4677 0.87 -0.6
5,216,254 + +0.3
5,216,254 + -0.2
5,216,255 - -0.1
5,216,360 + PfGW456L13_4678 0.11 -3.2
5,216,360 + PfGW456L13_4678 0.11 -0.2
5,216,360 + PfGW456L13_4678 0.11 +0.3
5,216,360 + PfGW456L13_4678 0.11 +0.2
5,216,360 + PfGW456L13_4678 0.11 -2.6
5,216,361 - PfGW456L13_4678 0.11 -0.0
5,216,361 - PfGW456L13_4678 0.11 +0.3
5,216,361 - PfGW456L13_4678 0.11 -3.3
5,216,558 - PfGW456L13_4678 0.38 -1.1
5,216,638 + PfGW456L13_4678 0.48 -3.2
5,216,638 + PfGW456L13_4678 0.48 -1.0
5,216,639 - PfGW456L13_4678 0.49 +0.3
5,216,639 - PfGW456L13_4678 0.49 -0.9
5,216,639 - PfGW456L13_4678 0.49 +0.0
5,216,721 - PfGW456L13_4678 0.59 -2.7
5,216,844 + PfGW456L13_4678 0.76 +0.2
5,216,949 - PfGW456L13_4678 0.90 -0.4
5,216,966 + -1.1
5,216,966 + -1.5
5,216,966 + +0.1
5,216,966 + +0.2
5,216,967 - -0.5
5,216,967 - -1.9
5,216,967 - -0.1
5,217,007 - -1.4
5,217,018 + -1.4
5,217,019 - -2.6
5,217,019 - -0.7
5,217,019 - -0.2
5,217,019 - -1.0
5,217,019 - -0.9
5,217,019 - -0.7
5,217,019 - -1.5
5,217,076 - +0.4
5,217,076 - +0.4
5,217,462 - PfGW456L13_4679 0.42 +0.3
5,217,589 + PfGW456L13_4679 0.54 +0.9
5,217,589 + PfGW456L13_4679 0.54 +1.7
5,217,589 + PfGW456L13_4679 0.54 +1.3
5,217,590 - PfGW456L13_4679 0.55 +0.8
5,217,590 - PfGW456L13_4679 0.55 +1.8
5,217,608 + PfGW456L13_4679 0.56 -0.9
5,217,844 + PfGW456L13_4679 0.79 -0.7
5,217,844 + PfGW456L13_4679 0.79 +1.1
5,217,845 - PfGW456L13_4679 0.79 -0.6
5,218,036 + +0.7
5,218,037 - -2.1
5,218,577 - +0.9
5,218,577 - -0.6
5,218,577 - +0.1
5,218,648 + +0.9
5,218,648 + -1.9
5,218,648 + +1.5
5,218,648 + -1.3
5,218,648 + -0.9
5,218,648 + -0.2
5,218,648 + +0.2
5,218,648 + -1.2
5,218,648 + +0.8
5,218,649 - -0.6
5,218,649 - -1.3
5,218,649 - +2.4
5,218,649 - +0.9
5,218,649 - -2.1
5,218,855 + PfGW456L13_4681 0.32 +0.1
5,218,930 + PfGW456L13_4681 0.41 +0.7
5,219,056 + PfGW456L13_4681 0.56 +0.3
5,219,056 + PfGW456L13_4681 0.56 -2.1
5,219,056 + PfGW456L13_4681 0.56 -0.1
5,219,056 + PfGW456L13_4681 0.56 +0.7
5,219,056 + PfGW456L13_4681 0.56 +1.0
5,219,056 + PfGW456L13_4681 0.56 -0.5
5,219,056 + PfGW456L13_4681 0.56 +0.7
5,219,056 + PfGW456L13_4681 0.56 +0.7
5,219,056 + PfGW456L13_4681 0.56 -0.3
5,219,057 - PfGW456L13_4681 0.56 -1.2
5,219,057 - PfGW456L13_4681 0.56 +0.1
5,219,057 - PfGW456L13_4681 0.56 -1.6
5,219,057 - PfGW456L13_4681 0.56 -0.4
5,219,057 - PfGW456L13_4681 0.56 +0.3
5,219,057 - PfGW456L13_4681 0.56 +0.3
5,219,057 - PfGW456L13_4681 0.56 +0.2
5,219,057 - PfGW456L13_4681 0.56 -0.1
5,219,057 - PfGW456L13_4681 0.56 -0.7
5,219,057 - PfGW456L13_4681 0.56 +1.1

Or see this region's nucleotide sequence