Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4592

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4590 and PfGW456L13_4591 overlap by 1 nucleotidesPfGW456L13_4591 and PfGW456L13_4592 overlap by 1 nucleotidesPfGW456L13_4592 and PfGW456L13_4593 are separated by 269 nucleotides PfGW456L13_4590 - Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 5,122,544 to 5,123,746 _4590 PfGW456L13_4591 - 3-oxoadipate CoA-transferase subunit B (EC 2.8.3.6) (from data), at 5,123,746 to 5,124,525 _4591 PfGW456L13_4592 - 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data), at 5,124,525 to 5,125,382 _4592 PfGW456L13_4593 - 4-hydroxybenzoate transporter, at 5,125,652 to 5,126,998 _4593 Position (kb) 5124 5125 5126Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5123.539 kb on + strand, within PfGW456L13_4590at 5123.540 kb on - strand, within PfGW456L13_4590at 5123.731 kb on + strandat 5123.731 kb on + strandat 5123.731 kb on + strandat 5123.732 kb on - strandat 5123.732 kb on - strandat 5123.732 kb on - strandat 5123.733 kb on + strandat 5123.733 kb on + strandat 5123.733 kb on + strandat 5123.733 kb on + strandat 5123.733 kb on + strandat 5123.733 kb on + strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5123.734 kb on - strandat 5124.051 kb on + strand, within PfGW456L13_4591at 5124.176 kb on + strand, within PfGW456L13_4591at 5124.176 kb on + strand, within PfGW456L13_4591at 5124.177 kb on - strand, within PfGW456L13_4591at 5124.177 kb on - strand, within PfGW456L13_4591at 5124.177 kb on - strand, within PfGW456L13_4591at 5124.296 kb on - strand, within PfGW456L13_4591at 5124.346 kb on + strand, within PfGW456L13_4591at 5124.347 kb on - strand, within PfGW456L13_4591at 5124.347 kb on - strand, within PfGW456L13_4591at 5124.347 kb on - strand, within PfGW456L13_4591at 5124.347 kb on - strand, within PfGW456L13_4591at 5124.380 kb on + strand, within PfGW456L13_4591at 5124.518 kb on + strandat 5124.518 kb on + strandat 5124.518 kb on + strandat 5124.518 kb on + strandat 5124.518 kb on + strandat 5124.519 kb on - strandat 5124.519 kb on - strandat 5124.519 kb on - strandat 5124.519 kb on - strandat 5124.519 kb on - strandat 5124.519 kb on - strandat 5124.519 kb on - strandat 5124.526 kb on + strandat 5124.526 kb on + strandat 5124.526 kb on + strandat 5124.526 kb on + strandat 5124.527 kb on - strandat 5124.527 kb on - strandat 5124.592 kb on + strandat 5124.592 kb on + strandat 5124.592 kb on + strandat 5124.592 kb on + strandat 5124.592 kb on + strandat 5124.592 kb on + strandat 5124.592 kb on + strandat 5124.593 kb on - strandat 5124.593 kb on - strandat 5124.593 kb on - strandat 5124.593 kb on - strandat 5124.593 kb on - strandat 5124.652 kb on + strand, within PfGW456L13_4592at 5124.653 kb on - strand, within PfGW456L13_4592at 5124.676 kb on + strand, within PfGW456L13_4592at 5124.676 kb on + strand, within PfGW456L13_4592at 5124.676 kb on + strand, within PfGW456L13_4592at 5124.676 kb on + strand, within PfGW456L13_4592at 5124.677 kb on - strand, within PfGW456L13_4592at 5124.711 kb on + strand, within PfGW456L13_4592at 5124.711 kb on + strand, within PfGW456L13_4592at 5124.711 kb on + strand, within PfGW456L13_4592at 5124.711 kb on + strand, within PfGW456L13_4592at 5124.711 kb on + strand, within PfGW456L13_4592at 5124.712 kb on - strand, within PfGW456L13_4592at 5124.712 kb on - strand, within PfGW456L13_4592at 5124.748 kb on - strand, within PfGW456L13_4592at 5124.748 kb on - strand, within PfGW456L13_4592at 5125.051 kb on + strand, within PfGW456L13_4592at 5125.051 kb on + strand, within PfGW456L13_4592at 5125.052 kb on - strand, within PfGW456L13_4592at 5125.117 kb on - strand, within PfGW456L13_4592at 5125.213 kb on + strand, within PfGW456L13_4592at 5125.214 kb on - strand, within PfGW456L13_4592at 5125.214 kb on - strand, within PfGW456L13_4592at 5125.214 kb on - strand, within PfGW456L13_4592at 5125.214 kb on - strand, within PfGW456L13_4592at 5125.304 kb on + strandat 5125.326 kb on - strandat 5125.338 kb on + strandat 5125.400 kb on + strandat 5125.401 kb on - strandat 5125.458 kb on + strandat 5125.458 kb on + strandat 5125.531 kb on + strandat 5125.535 kb on + strandat 5125.536 kb on - strandat 5125.623 kb on + strandat 5125.623 kb on + strandat 5125.623 kb on + strandat 5125.623 kb on + strandat 5125.623 kb on + strandat 5125.623 kb on + strandat 5125.623 kb on + strandat 5125.624 kb on - strandat 5125.624 kb on - strandat 5125.624 kb on - strandat 5125.624 kb on - strandat 5125.624 kb on - strandat 5125.995 kb on + strand, within PfGW456L13_4593at 5125.995 kb on + strand, within PfGW456L13_4593at 5125.995 kb on + strand, within PfGW456L13_4593at 5125.995 kb on + strand, within PfGW456L13_4593at 5125.996 kb on - strand, within PfGW456L13_4593at 5125.996 kb on - strand, within PfGW456L13_4593at 5126.081 kb on + strand, within PfGW456L13_4593at 5126.081 kb on + strand, within PfGW456L13_4593at 5126.081 kb on + strand, within PfGW456L13_4593at 5126.081 kb on + strand, within PfGW456L13_4593at 5126.160 kb on + strand, within PfGW456L13_4593at 5126.161 kb on - strand, within PfGW456L13_4593at 5126.161 kb on - strand, within PfGW456L13_4593at 5126.161 kb on - strand, within PfGW456L13_4593at 5126.184 kb on + strand, within PfGW456L13_4593at 5126.184 kb on + strand, within PfGW456L13_4593at 5126.184 kb on + strand, within PfGW456L13_4593at 5126.184 kb on + strand, within PfGW456L13_4593at 5126.184 kb on + strand, within PfGW456L13_4593at 5126.184 kb on + strandat 5126.185 kb on - strand, within PfGW456L13_4593at 5126.185 kb on - strand, within PfGW456L13_4593at 5126.185 kb on - strand, within PfGW456L13_4593at 5126.185 kb on - strand, within PfGW456L13_4593at 5126.217 kb on + strand, within PfGW456L13_4593at 5126.217 kb on + strand, within PfGW456L13_4593at 5126.217 kb on + strand, within PfGW456L13_4593at 5126.217 kb on + strand, within PfGW456L13_4593at 5126.217 kb on + strand, within PfGW456L13_4593at 5126.217 kb on + strand, within PfGW456L13_4593at 5126.218 kb on - strand, within PfGW456L13_4593at 5126.218 kb on - strand, within PfGW456L13_4593at 5126.218 kb on - strand, within PfGW456L13_4593at 5126.218 kb on - strand, within PfGW456L13_4593at 5126.218 kb on - strand, within PfGW456L13_4593at 5126.218 kb on - strand, within PfGW456L13_4593at 5126.336 kb on + strand, within PfGW456L13_4593at 5126.336 kb on + strand, within PfGW456L13_4593at 5126.336 kb on + strand, within PfGW456L13_4593at 5126.336 kb on + strand, within PfGW456L13_4593at 5126.336 kb on + strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593at 5126.337 kb on - strand, within PfGW456L13_4593

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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5,123,539 + PfGW456L13_4590 0.83 -2.4
5,123,540 - PfGW456L13_4590 0.83 -2.3
5,123,731 + -3.6
5,123,731 + -3.1
5,123,731 + -1.0
5,123,732 - -4.0
5,123,732 - -3.4
5,123,732 - -3.4
5,123,733 + -3.2
5,123,733 + -1.3
5,123,733 + -1.7
5,123,733 + -3.6
5,123,733 + -2.4
5,123,733 + -2.1
5,123,734 - -2.1
5,123,734 - +0.7
5,123,734 - -4.8
5,123,734 - -3.1
5,123,734 - -2.1
5,123,734 - -3.3
5,123,734 - -2.7
5,123,734 - -4.5
5,124,051 + PfGW456L13_4591 0.39 -2.7
5,124,176 + PfGW456L13_4591 0.55 -4.8
5,124,176 + PfGW456L13_4591 0.55 -4.0
5,124,177 - PfGW456L13_4591 0.55 -3.2
5,124,177 - PfGW456L13_4591 0.55 -0.6
5,124,177 - PfGW456L13_4591 0.55 -0.4
5,124,296 - PfGW456L13_4591 0.71 -4.6
5,124,346 + PfGW456L13_4591 0.77 -3.5
5,124,347 - PfGW456L13_4591 0.77 -3.0
5,124,347 - PfGW456L13_4591 0.77 -1.0
5,124,347 - PfGW456L13_4591 0.77 -3.9
5,124,347 - PfGW456L13_4591 0.77 -3.2
5,124,380 + PfGW456L13_4591 0.81 -3.8
5,124,518 + +0.2
5,124,518 + -3.5
5,124,518 + -2.7
5,124,518 + -3.0
5,124,518 + -2.3
5,124,519 - -4.4
5,124,519 - -2.4
5,124,519 - -2.6
5,124,519 - -2.5
5,124,519 - -2.0
5,124,519 - -3.1
5,124,519 - -3.8
5,124,526 + -3.1
5,124,526 + -2.7
5,124,526 + -2.0
5,124,526 + -1.3
5,124,527 - -2.1
5,124,527 - -3.5
5,124,592 + -2.8
5,124,592 + -2.6
5,124,592 + -1.3
5,124,592 + -3.2
5,124,592 + -2.2
5,124,592 + -4.8
5,124,592 + -2.8
5,124,593 - -1.0
5,124,593 - -2.6
5,124,593 - -2.9
5,124,593 - -2.7
5,124,593 - -2.4
5,124,652 + PfGW456L13_4592 0.15 -3.6
5,124,653 - PfGW456L13_4592 0.15 -3.4
5,124,676 + PfGW456L13_4592 0.18 -3.6
5,124,676 + PfGW456L13_4592 0.18 -3.1
5,124,676 + PfGW456L13_4592 0.18 -2.5
5,124,676 + PfGW456L13_4592 0.18 -4.6
5,124,677 - PfGW456L13_4592 0.18 -3.2
5,124,711 + PfGW456L13_4592 0.22 -1.3
5,124,711 + PfGW456L13_4592 0.22 -3.1
5,124,711 + PfGW456L13_4592 0.22 -3.6
5,124,711 + PfGW456L13_4592 0.22 -1.6
5,124,711 + PfGW456L13_4592 0.22 -2.2
5,124,712 - PfGW456L13_4592 0.22 -1.2
5,124,712 - PfGW456L13_4592 0.22 -1.9
5,124,748 - PfGW456L13_4592 0.26 -5.0
5,124,748 - PfGW456L13_4592 0.26 -1.9
5,125,051 + PfGW456L13_4592 0.61 -3.1
5,125,051 + PfGW456L13_4592 0.61 -2.2
5,125,052 - PfGW456L13_4592 0.61 -1.2
5,125,117 - PfGW456L13_4592 0.69 -3.0
5,125,213 + PfGW456L13_4592 0.80 -2.3
5,125,214 - PfGW456L13_4592 0.80 -4.0
5,125,214 - PfGW456L13_4592 0.80 -2.3
5,125,214 - PfGW456L13_4592 0.80 -2.6
5,125,214 - PfGW456L13_4592 0.80 -2.9
5,125,304 + -3.4
5,125,326 - -1.3
5,125,338 + -3.9
5,125,400 + -2.0
5,125,401 - -2.4
5,125,458 + -4.0
5,125,458 + -2.7
5,125,531 + -1.4
5,125,535 + +0.4
5,125,536 - -1.1
5,125,623 + -1.9
5,125,623 + -1.6
5,125,623 + -1.9
5,125,623 + -1.1
5,125,623 + +0.0
5,125,623 + +0.5
5,125,623 + +0.8
5,125,624 - +0.8
5,125,624 - +1.0
5,125,624 - -3.5
5,125,624 - -2.1
5,125,624 - -0.1
5,125,995 + PfGW456L13_4593 0.25 -0.1
5,125,995 + PfGW456L13_4593 0.25 -0.4
5,125,995 + PfGW456L13_4593 0.25 +0.9
5,125,995 + PfGW456L13_4593 0.25 +0.4
5,125,996 - PfGW456L13_4593 0.26 -0.8
5,125,996 - PfGW456L13_4593 0.26 -0.4
5,126,081 + PfGW456L13_4593 0.32 -0.2
5,126,081 + PfGW456L13_4593 0.32 +0.3
5,126,081 + PfGW456L13_4593 0.32 +0.4
5,126,081 + PfGW456L13_4593 0.32 -1.4
5,126,160 + PfGW456L13_4593 0.38 +1.0
5,126,161 - PfGW456L13_4593 0.38 -0.6
5,126,161 - PfGW456L13_4593 0.38 -0.5
5,126,161 - PfGW456L13_4593 0.38 +0.1
5,126,184 + PfGW456L13_4593 0.39 +1.5
5,126,184 + PfGW456L13_4593 0.39 +0.5
5,126,184 + PfGW456L13_4593 0.39 +0.3
5,126,184 + PfGW456L13_4593 0.39 -1.7
5,126,184 + PfGW456L13_4593 0.39 +0.4
5,126,184 + -1.0
5,126,185 - PfGW456L13_4593 0.40 +0.2
5,126,185 - PfGW456L13_4593 0.40 -0.5
5,126,185 - PfGW456L13_4593 0.40 +0.1
5,126,185 - PfGW456L13_4593 0.40 -0.6
5,126,217 + PfGW456L13_4593 0.42 -1.1
5,126,217 + PfGW456L13_4593 0.42 +0.6
5,126,217 + PfGW456L13_4593 0.42 -0.8
5,126,217 + PfGW456L13_4593 0.42 +0.8
5,126,217 + PfGW456L13_4593 0.42 -0.4
5,126,217 + PfGW456L13_4593 0.42 -0.0
5,126,218 - PfGW456L13_4593 0.42 -1.2
5,126,218 - PfGW456L13_4593 0.42 -0.1
5,126,218 - PfGW456L13_4593 0.42 -1.1
5,126,218 - PfGW456L13_4593 0.42 -1.1
5,126,218 - PfGW456L13_4593 0.42 +0.7
5,126,218 - PfGW456L13_4593 0.42 +0.2
5,126,336 + PfGW456L13_4593 0.51 -2.4
5,126,336 + PfGW456L13_4593 0.51 -0.0
5,126,336 + PfGW456L13_4593 0.51 +0.3
5,126,336 + PfGW456L13_4593 0.51 -0.8
5,126,336 + PfGW456L13_4593 0.51 +0.4
5,126,337 - PfGW456L13_4593 0.51 +0.6
5,126,337 - PfGW456L13_4593 0.51 +0.1
5,126,337 - PfGW456L13_4593 0.51 -1.3
5,126,337 - PfGW456L13_4593 0.51 +1.0
5,126,337 - PfGW456L13_4593 0.51 +0.4
5,126,337 - PfGW456L13_4593 0.51 +0.7
5,126,337 - PfGW456L13_4593 0.51 +0.4
5,126,337 - PfGW456L13_4593 0.51 +0.3

Or see this region's nucleotide sequence