Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_421

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_420 and PfGW456L13_421 are separated by 18 nucleotidesPfGW456L13_421 and PfGW456L13_422 are separated by 48 nucleotides PfGW456L13_420 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 484,485 to 486,026 _420 PfGW456L13_421 - hypothetical protein, at 486,045 to 486,158 _421 PfGW456L13_422 - 33 kDa chaperonin (Heat shock protein 33) (HSP33), at 486,207 to 487,109 _422 Position (kb) 486 487Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 485.254 kb on + strand, within PfGW456L13_420at 485.633 kb on - strand, within PfGW456L13_420at 486.002 kb on - strandat 486.072 kb on - strand, within PfGW456L13_421at 486.075 kb on - strand, within PfGW456L13_421at 486.090 kb on - strand, within PfGW456L13_421at 486.090 kb on - strand, within PfGW456L13_421at 486.093 kb on - strand, within PfGW456L13_421at 486.140 kb on + strand, within PfGW456L13_421at 486.141 kb on - strand, within PfGW456L13_421at 486.156 kb on + strandat 486.165 kb on + strandat 487.110 kb on - strandat 487.110 kb on - strandat 487.120 kb on - strandat 487.129 kb on - strandat 487.129 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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485,254 + PfGW456L13_420 0.50 +0.6
485,633 - PfGW456L13_420 0.74 +1.4
486,002 - -0.6
486,072 - PfGW456L13_421 0.24 -1.0
486,075 - PfGW456L13_421 0.26 -2.8
486,090 - PfGW456L13_421 0.39 -4.5
486,090 - PfGW456L13_421 0.39 -1.2
486,093 - PfGW456L13_421 0.42 -2.7
486,140 + PfGW456L13_421 0.83 -4.3
486,141 - PfGW456L13_421 0.84 +0.4
486,156 + -4.4
486,165 + -0.9
487,110 - -1.2
487,110 - +0.9
487,120 - +0.8
487,129 - +0.1
487,129 - -0.6

Or see this region's nucleotide sequence