Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_395 and PfGW456L13_396 are separated by 229 nucleotides PfGW456L13_396 and PfGW456L13_397 are separated by 242 nucleotides PfGW456L13_397 and PfGW456L13_398 are separated by 275 nucleotides
PfGW456L13_395 - Ferrichrome-iron receptor, at 453,772 to 455,865
_395
PfGW456L13_396 - FIG00953324: hypothetical protein, at 456,095 to 456,307
_396
PfGW456L13_397 - Agmatine deiminase (EC 3.5.3.12), at 456,550 to 457,656
_397
PfGW456L13_398 - 4-aminobutyrate aminotransferase (EC 2.6.1.19), at 457,932 to 460,844
_398
Position (kb) 456
457
458 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 455.662 kb on + strand at 455.698 kb on + strand at 455.698 kb on + strand at 455.699 kb on - strand at 455.699 kb on - strand at 455.766 kb on + strand at 455.767 kb on - strand at 455.767 kb on - strand at 455.767 kb on - strand at 455.782 kb on + strand at 455.782 kb on + strand at 455.782 kb on + strand at 455.783 kb on - strand at 455.783 kb on - strand at 455.783 kb on - strand at 455.783 kb on - strand at 455.786 kb on - strand at 455.786 kb on - strand at 455.854 kb on + strand at 455.854 kb on + strand at 455.854 kb on + strand at 455.854 kb on + strand at 455.854 kb on + strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.855 kb on - strand at 455.863 kb on + strand at 455.864 kb on - strand at 455.874 kb on + strand at 455.875 kb on - strand at 455.875 kb on - strand at 455.875 kb on - strand at 455.875 kb on - strand at 455.892 kb on + strand at 455.892 kb on + strand at 455.893 kb on - strand at 455.893 kb on - strand at 455.958 kb on - strand at 455.959 kb on + strand at 455.959 kb on + strand at 455.959 kb on + strand at 455.960 kb on - strand at 455.960 kb on - strand at 455.960 kb on - strand at 455.960 kb on - strand at 455.960 kb on - strand at 455.960 kb on - strand at 456.014 kb on + strand at 456.014 kb on + strand at 456.015 kb on - strand at 456.096 kb on + strand at 456.187 kb on + strand, within PfGW456L13_396 at 456.250 kb on + strand, within PfGW456L13_396 at 456.250 kb on + strand, within PfGW456L13_396 at 456.250 kb on + strand, within PfGW456L13_396 at 456.254 kb on + strand, within PfGW456L13_396 at 456.254 kb on + strand, within PfGW456L13_396 at 456.255 kb on - strand, within PfGW456L13_396 at 456.255 kb on - strand, within PfGW456L13_396 at 456.287 kb on + strand at 456.287 kb on + strand at 456.287 kb on + strand at 456.287 kb on + strand at 456.287 kb on + strand at 456.288 kb on - strand at 456.288 kb on - strand at 456.288 kb on - strand at 456.288 kb on - strand at 456.339 kb on - strand at 456.343 kb on + strand at 456.343 kb on + strand at 456.344 kb on - strand at 456.344 kb on - strand at 456.344 kb on - strand at 456.355 kb on - strand at 456.366 kb on + strand at 456.366 kb on + strand at 456.366 kb on + strand at 456.366 kb on + strand at 456.366 kb on + strand at 456.366 kb on + strand at 456.366 kb on + strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.367 kb on - strand at 456.389 kb on + strand at 456.403 kb on + strand at 456.403 kb on + strand at 456.404 kb on - strand at 456.404 kb on - strand at 456.444 kb on + strand at 456.445 kb on - strand at 456.445 kb on - strand at 456.595 kb on - strand at 456.595 kb on - strand at 456.595 kb on - strand at 456.747 kb on - strand, within PfGW456L13_397 at 456.769 kb on - strand, within PfGW456L13_397 at 456.769 kb on - strand, within PfGW456L13_397 at 456.775 kb on - strand, within PfGW456L13_397 at 456.775 kb on - strand, within PfGW456L13_397 at 456.775 kb on - strand, within PfGW456L13_397 at 456.775 kb on - strand, within PfGW456L13_397 at 456.775 kb on - strand, within PfGW456L13_397 at 456.986 kb on + strand, within PfGW456L13_397 at 456.986 kb on + strand, within PfGW456L13_397 at 456.987 kb on - strand, within PfGW456L13_397 at 457.000 kb on - strand, within PfGW456L13_397 at 457.280 kb on + strand, within PfGW456L13_397 at 457.344 kb on + strand, within PfGW456L13_397 at 457.345 kb on - strand, within PfGW456L13_397 at 457.345 kb on - strand, within PfGW456L13_397 at 457.345 kb on - strand, within PfGW456L13_397 at 457.363 kb on - strand, within PfGW456L13_397 at 457.614 kb on + strand at 457.614 kb on + strand at 457.614 kb on + strand at 457.614 kb on + strand at 457.615 kb on - strand at 457.615 kb on - strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.616 kb on + strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.617 kb on - strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.704 kb on + strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.705 kb on - strand at 457.710 kb on + strand at 457.710 kb on + strand at 457.711 kb on - strand at 457.735 kb on + strand at 457.735 kb on + strand at 457.735 kb on + strand at 457.736 kb on - strand at 457.736 kb on - strand at 457.736 kb on - strand at 457.736 kb on - strand at 457.737 kb on + strand at 457.738 kb on - strand at 457.738 kb on - strand at 457.738 kb on - strand at 457.748 kb on + strand at 457.748 kb on + strand at 457.758 kb on + strand at 457.759 kb on - strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.768 kb on + strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.769 kb on - strand at 457.796 kb on + strand at 457.796 kb on + strand at 457.819 kb on - strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.910 kb on + strand at 457.911 kb on - strand at 457.911 kb on - strand at 457.911 kb on - strand at 457.911 kb on - strand at 457.911 kb on - strand at 457.934 kb on - strand at 457.934 kb on - strand at 457.934 kb on - strand at 458.032 kb on + strand at 458.033 kb on - strand at 458.149 kb on + strand at 458.149 kb on + strand at 458.190 kb on - strand at 458.333 kb on - strand, within PfGW456L13_398 at 458.333 kb on - strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.539 kb on + strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.540 kb on - strand, within PfGW456L13_398 at 458.554 kb on + strand, within PfGW456L13_398 at 458.554 kb on + strand, within PfGW456L13_398 at 458.554 kb on + strand, within PfGW456L13_398 at 458.555 kb on - strand, within PfGW456L13_398 at 458.555 kb on - strand, within PfGW456L13_398 at 458.574 kb on - strand, within PfGW456L13_398
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 455,662 + -3.8 455,698 + -0.4 455,698 + -0.2 455,699 - +0.4 455,699 - +0.7 455,766 + -0.2 455,767 - -1.0 455,767 - -1.0 455,767 - -1.7 455,782 + +2.1 455,782 + -1.4 455,782 + -0.2 455,783 - +0.2 455,783 - -1.2 455,783 - -1.1 455,783 - +0.2 455,786 - +0.7 455,786 - +0.6 455,854 + +0.4 455,854 + -2.1 455,854 + +0.2 455,854 + -0.2 455,854 + +0.3 455,855 - +0.4 455,855 - -0.5 455,855 - +0.1 455,855 - -0.0 455,863 + -0.5 455,864 - +0.9 455,874 + -0.7 455,875 - +1.4 455,875 - -0.7 455,875 - +1.1 455,875 - +0.8 455,892 + -0.6 455,892 + -2.4 455,893 - -0.5 455,893 - +1.4 455,958 - -1.8 455,959 + +0.7 455,959 + -0.2 455,959 + +0.7 455,960 - +1.3 455,960 - +0.8 455,960 - -0.5 455,960 - -1.8 455,960 - +0.6 455,960 - +2.0 456,014 + -0.6 456,014 + -0.8 456,015 - +0.0 456,096 + +0.4 456,187 + PfGW456L13_396 0.43 +1.1 456,250 + PfGW456L13_396 0.73 +1.5 456,250 + PfGW456L13_396 0.73 -2.6 456,250 + PfGW456L13_396 0.73 +0.2 456,254 + PfGW456L13_396 0.75 -0.1 456,254 + PfGW456L13_396 0.75 +0.3 456,255 - PfGW456L13_396 0.75 +0.4 456,255 - PfGW456L13_396 0.75 -0.1 456,287 + +0.5 456,287 + +0.9 456,287 + +0.7 456,287 + +1.7 456,287 + -0.8 456,288 - -0.1 456,288 - +0.8 456,288 - -0.5 456,288 - +0.5 456,339 - -0.1 456,343 + +0.8 456,343 + +0.2 456,344 - +0.3 456,344 - +0.7 456,344 - -1.3 456,355 - -0.3 456,366 + +0.1 456,366 + +0.4 456,366 + +0.1 456,366 + +0.3 456,366 + -0.9 456,366 + -2.1 456,366 + +1.2 456,367 - +0.3 456,367 - +0.0 456,367 - +1.0 456,367 - +0.5 456,367 - -1.1 456,367 - -0.1 456,367 - -1.3 456,367 - -0.6 456,367 - -1.1 456,367 - +1.6 456,389 + -0.1 456,403 + +2.3 456,403 + -0.1 456,404 - -1.4 456,404 - -0.4 456,444 + +0.6 456,445 - -0.1 456,445 - -0.7 456,595 - -0.6 456,595 - +0.9 456,595 - +0.8 456,747 - PfGW456L13_397 0.18 +1.3 456,769 - PfGW456L13_397 0.20 +0.8 456,769 - PfGW456L13_397 0.20 -1.6 456,775 - PfGW456L13_397 0.20 +0.6 456,775 - PfGW456L13_397 0.20 +1.0 456,775 - PfGW456L13_397 0.20 +0.1 456,775 - PfGW456L13_397 0.20 +0.6 456,775 - PfGW456L13_397 0.20 +0.4 456,986 + PfGW456L13_397 0.39 +1.7 456,986 + PfGW456L13_397 0.39 +0.1 456,987 - PfGW456L13_397 0.39 -0.3 457,000 - PfGW456L13_397 0.41 -0.8 457,280 + PfGW456L13_397 0.66 -0.4 457,344 + PfGW456L13_397 0.72 +2.1 457,345 - PfGW456L13_397 0.72 +2.6 457,345 - PfGW456L13_397 0.72 +0.9 457,345 - PfGW456L13_397 0.72 +2.1 457,363 - PfGW456L13_397 0.73 +1.3 457,614 + +1.0 457,614 + +0.9 457,614 + +1.0 457,614 + +0.2 457,615 - -0.6 457,615 - +0.1 457,616 + +1.0 457,616 + +0.4 457,616 + +0.5 457,616 + -0.8 457,616 + +0.8 457,616 + +0.4 457,616 + +1.1 457,616 + +1.2 457,616 + +0.6 457,616 + +0.1 457,616 + +0.9 457,616 + +1.2 457,616 + +0.9 457,616 + +0.5 457,616 + +0.9 457,616 + +0.6 457,616 + +0.5 457,616 + +0.3 457,616 + -0.9 457,617 - +0.8 457,617 - -0.1 457,617 - -0.6 457,617 - +0.9 457,617 - +1.7 457,617 - +1.4 457,617 - -0.4 457,617 - +1.1 457,617 - +1.8 457,617 - +1.4 457,617 - -1.4 457,617 - +1.2 457,617 - +0.1 457,617 - +1.4 457,617 - +1.6 457,617 - +1.2 457,617 - -1.2 457,704 + -1.7 457,704 + -0.3 457,704 + -0.9 457,704 + +0.8 457,704 + +0.5 457,704 + +0.3 457,704 + -0.9 457,704 + -0.2 457,704 + -0.3 457,704 + -1.2 457,705 - +0.3 457,705 - +0.2 457,705 - -0.6 457,705 - +0.8 457,705 - +1.0 457,705 - +0.7 457,705 - -0.0 457,705 - +0.2 457,705 - -1.2 457,705 - +0.0 457,705 - +1.0 457,705 - +2.1 457,705 - +0.2 457,705 - -0.2 457,705 - -1.8 457,705 - +0.2 457,705 - +1.0 457,705 - +0.4 457,705 - +0.3 457,705 - +1.0 457,710 + -2.2 457,710 + -3.3 457,711 - -3.1 457,735 + -0.2 457,735 + +0.8 457,735 + +0.4 457,736 - -0.8 457,736 - +1.8 457,736 - +0.3 457,736 - +0.4 457,737 + -0.1 457,738 - -0.4 457,738 - +1.1 457,738 - +0.6 457,748 + -2.3 457,748 + -1.1 457,758 + +0.0 457,759 - +0.8 457,768 + +0.3 457,768 + +0.4 457,768 + +0.1 457,768 + -1.9 457,768 + -0.8 457,768 + -1.1 457,768 + -1.6 457,768 + -0.8 457,768 + +0.5 457,768 + +1.8 457,768 + -0.7 457,768 + +1.4 457,768 + +0.7 457,768 + +1.2 457,768 + +0.2 457,768 + +1.5 457,768 + +0.5 457,768 + +0.3 457,768 + -0.0 457,768 + -0.7 457,769 - +0.8 457,769 - -0.9 457,769 - -0.3 457,769 - -2.4 457,769 - -1.2 457,769 - -0.8 457,769 - +0.3 457,769 - -1.2 457,769 - -1.3 457,769 - +1.4 457,769 - -0.7 457,769 - +0.4 457,769 - +1.5 457,769 - +1.4 457,769 - +0.8 457,796 + +0.5 457,796 + +0.5 457,819 - +0.0 457,910 + +1.0 457,910 + +1.0 457,910 + -0.0 457,910 + +1.0 457,910 + +0.2 457,910 + +0.4 457,910 + +0.5 457,910 + -0.5 457,910 + +0.3 457,910 + +0.2 457,910 + -0.5 457,910 + +0.1 457,910 + -1.6 457,910 + -2.1 457,911 - +1.8 457,911 - -0.8 457,911 - -1.3 457,911 - +1.3 457,911 - -0.0 457,934 - +1.1 457,934 - -0.5 457,934 - +1.1 458,032 + +1.1 458,033 - +0.1 458,149 + +0.8 458,149 + +1.1 458,190 - +0.1 458,333 - PfGW456L13_398 0.14 -1.5 458,333 - PfGW456L13_398 0.14 +0.1 458,539 + PfGW456L13_398 0.21 -0.0 458,539 + PfGW456L13_398 0.21 +0.6 458,539 + PfGW456L13_398 0.21 +0.4 458,539 + PfGW456L13_398 0.21 -0.9 458,539 + PfGW456L13_398 0.21 +2.3 458,539 + PfGW456L13_398 0.21 +0.7 458,539 + PfGW456L13_398 0.21 -0.3 458,539 + PfGW456L13_398 0.21 -0.9 458,540 - PfGW456L13_398 0.21 -0.4 458,540 - PfGW456L13_398 0.21 +0.1 458,540 - PfGW456L13_398 0.21 +0.0 458,540 - PfGW456L13_398 0.21 +0.9 458,540 - PfGW456L13_398 0.21 +0.4 458,540 - PfGW456L13_398 0.21 -0.4 458,540 - PfGW456L13_398 0.21 +0.3 458,554 + PfGW456L13_398 0.21 -1.1 458,554 + PfGW456L13_398 0.21 -0.5 458,554 + PfGW456L13_398 0.21 +1.1 458,555 - PfGW456L13_398 0.21 +0.7 458,555 - PfGW456L13_398 0.21 +1.1 458,574 - PfGW456L13_398 0.22 -1.4
Or see this region's nucleotide sequence