Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3703

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3702 and PfGW456L13_3703 are separated by 18 nucleotidesPfGW456L13_3703 and PfGW456L13_3704 are separated by 127 nucleotides PfGW456L13_3702 - Succinylglutamate desuccinylase/aspartoacylase, at 4,164,182 to 4,165,294 _3702 PfGW456L13_3703 - Arginine/ornithine ABC transporter, ATP-binding protein AotP, at 4,165,313 to 4,166,077 _3703 PfGW456L13_3704 - Transcriptional regulator RpiR in protein degradation cluster, at 4,166,205 to 4,167,113 _3704 Position (kb) 4165 4166 4167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.837 kb on + strand, within PfGW456L13_3702at 4164.838 kb on - strand, within PfGW456L13_3702at 4165.052 kb on + strand, within PfGW456L13_3702at 4165.053 kb on - strand, within PfGW456L13_3702at 4165.053 kb on - strand, within PfGW456L13_3702at 4165.053 kb on - strand, within PfGW456L13_3702at 4165.196 kb on + strandat 4165.259 kb on - strandat 4165.316 kb on + strandat 4165.316 kb on + strandat 4165.316 kb on + strandat 4165.317 kb on - strandat 4165.317 kb on - strandat 4165.317 kb on - strandat 4165.342 kb on + strandat 4165.442 kb on - strand, within PfGW456L13_3703at 4165.490 kb on - strand, within PfGW456L13_3703at 4165.588 kb on - strand, within PfGW456L13_3703at 4165.588 kb on - strand, within PfGW456L13_3703at 4165.596 kb on + strand, within PfGW456L13_3703at 4165.709 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.759 kb on + strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strand, within PfGW456L13_3703at 4165.760 kb on - strandat 4165.760 kb on - strand, within PfGW456L13_3703at 4165.879 kb on + strand, within PfGW456L13_3703at 4165.880 kb on - strand, within PfGW456L13_3703at 4166.075 kb on + strandat 4166.075 kb on + strandat 4166.075 kb on + strandat 4166.076 kb on - strandat 4166.236 kb on - strandat 4166.236 kb on - strandat 4166.643 kb on + strand, within PfGW456L13_3704at 4166.670 kb on + strand, within PfGW456L13_3704at 4166.671 kb on - strand, within PfGW456L13_3704at 4166.671 kb on - strand, within PfGW456L13_3704at 4166.671 kb on - strand, within PfGW456L13_3704at 4166.818 kb on - strand, within PfGW456L13_3704at 4166.977 kb on + strand, within PfGW456L13_3704at 4167.072 kb on + strandat 4167.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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4,164,713 + PfGW456L13_3702 0.48 +0.7
4,164,713 + PfGW456L13_3702 0.48 -2.0
4,164,713 + PfGW456L13_3702 0.48 +0.9
4,164,713 + PfGW456L13_3702 0.48 -0.7
4,164,713 + PfGW456L13_3702 0.48 -3.9
4,164,713 + PfGW456L13_3702 0.48 -4.4
4,164,714 - PfGW456L13_3702 0.48 +0.8
4,164,714 - PfGW456L13_3702 0.48 -0.4
4,164,714 - PfGW456L13_3702 0.48 -1.0
4,164,714 - PfGW456L13_3702 0.48 +0.7
4,164,714 - PfGW456L13_3702 0.48 -0.1
4,164,714 - PfGW456L13_3702 0.48 +0.9
4,164,714 - PfGW456L13_3702 0.48 -0.8
4,164,837 + PfGW456L13_3702 0.59 -0.1
4,164,838 - PfGW456L13_3702 0.59 +0.3
4,165,052 + PfGW456L13_3702 0.78 -0.7
4,165,053 - PfGW456L13_3702 0.78 -0.7
4,165,053 - PfGW456L13_3702 0.78 +0.8
4,165,053 - PfGW456L13_3702 0.78 +0.9
4,165,196 + -2.3
4,165,259 - +0.1
4,165,316 + +0.0
4,165,316 + -0.1
4,165,316 + +0.5
4,165,317 - +0.5
4,165,317 - +0.7
4,165,317 - +0.5
4,165,342 + -0.1
4,165,442 - PfGW456L13_3703 0.17 +0.2
4,165,490 - PfGW456L13_3703 0.23 +0.9
4,165,588 - PfGW456L13_3703 0.36 -0.3
4,165,588 - PfGW456L13_3703 0.36 +0.4
4,165,596 + PfGW456L13_3703 0.37 +1.4
4,165,709 + PfGW456L13_3703 0.52 -2.0
4,165,759 + PfGW456L13_3703 0.58 -1.2
4,165,759 + PfGW456L13_3703 0.58 -0.2
4,165,759 + PfGW456L13_3703 0.58 -0.3
4,165,759 + PfGW456L13_3703 0.58 +0.6
4,165,759 + PfGW456L13_3703 0.58 +0.4
4,165,759 + PfGW456L13_3703 0.58 +0.6
4,165,759 + PfGW456L13_3703 0.58 +0.3
4,165,759 + PfGW456L13_3703 0.58 +1.1
4,165,759 + PfGW456L13_3703 0.58 +0.4
4,165,760 - PfGW456L13_3703 0.58 -0.5
4,165,760 - PfGW456L13_3703 0.58 -0.6
4,165,760 - PfGW456L13_3703 0.58 +2.2
4,165,760 - PfGW456L13_3703 0.58 -0.1
4,165,760 - PfGW456L13_3703 0.58 +1.5
4,165,760 - PfGW456L13_3703 0.58 -2.8
4,165,760 - -1.1
4,165,760 - PfGW456L13_3703 0.58 -0.4
4,165,879 + PfGW456L13_3703 0.74 -0.3
4,165,880 - PfGW456L13_3703 0.74 +1.5
4,166,075 + -0.6
4,166,075 + -0.4
4,166,075 + +0.4
4,166,076 - -0.5
4,166,236 - +0.6
4,166,236 - -0.6
4,166,643 + PfGW456L13_3704 0.48 -1.9
4,166,670 + PfGW456L13_3704 0.51 -1.6
4,166,671 - PfGW456L13_3704 0.51 -2.3
4,166,671 - PfGW456L13_3704 0.51 -0.4
4,166,671 - PfGW456L13_3704 0.51 +0.7
4,166,818 - PfGW456L13_3704 0.67 +0.2
4,166,977 + PfGW456L13_3704 0.85 -2.6
4,167,072 + -2.0
4,167,073 - +0.3

Or see this region's nucleotide sequence