Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3701

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3699 and PfGW456L13_3700 are separated by 91 nucleotidesPfGW456L13_3700 and PfGW456L13_3701 are separated by 12 nucleotidesPfGW456L13_3701 and PfGW456L13_3702 are separated by 9 nucleotides PfGW456L13_3699 - Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein, at 4,161,904 to 4,162,680 _3699 PfGW456L13_3700 - Arginine/ornithine ABC transporter, permease protein AotQ, at 4,162,772 to 4,163,461 _3700 PfGW456L13_3701 - Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1), at 4,163,474 to 4,164,172 _3701 PfGW456L13_3702 - Succinylglutamate desuccinylase/aspartoacylase, at 4,164,182 to 4,165,294 _3702 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4162.630 kb on + strandat 4162.630 kb on + strandat 4162.652 kb on - strandat 4162.669 kb on + strandat 4162.670 kb on - strandat 4162.670 kb on - strandat 4162.670 kb on - strandat 4162.670 kb on - strandat 4162.678 kb on + strandat 4162.678 kb on + strandat 4162.691 kb on + strandat 4162.709 kb on - strandat 4162.709 kb on - strandat 4162.822 kb on - strandat 4162.925 kb on + strand, within PfGW456L13_3700at 4162.925 kb on + strand, within PfGW456L13_3700at 4162.925 kb on + strand, within PfGW456L13_3700at 4162.925 kb on + strand, within PfGW456L13_3700at 4162.926 kb on - strand, within PfGW456L13_3700at 4163.024 kb on + strand, within PfGW456L13_3700at 4163.025 kb on - strand, within PfGW456L13_3700at 4163.034 kb on - strand, within PfGW456L13_3700at 4163.034 kb on - strand, within PfGW456L13_3700at 4163.036 kb on - strand, within PfGW456L13_3700at 4163.093 kb on + strand, within PfGW456L13_3700at 4163.094 kb on - strand, within PfGW456L13_3700at 4163.162 kb on + strand, within PfGW456L13_3700at 4163.162 kb on + strand, within PfGW456L13_3700at 4163.163 kb on - strand, within PfGW456L13_3700at 4163.163 kb on - strand, within PfGW456L13_3700at 4163.254 kb on - strand, within PfGW456L13_3700at 4163.375 kb on + strand, within PfGW456L13_3700at 4163.430 kb on - strandat 4163.430 kb on - strandat 4163.486 kb on + strandat 4163.487 kb on - strandat 4163.487 kb on - strandat 4163.487 kb on - strandat 4163.517 kb on - strandat 4163.554 kb on + strand, within PfGW456L13_3701at 4163.554 kb on + strand, within PfGW456L13_3701at 4163.554 kb on + strand, within PfGW456L13_3701at 4163.554 kb on + strand, within PfGW456L13_3701at 4163.555 kb on - strand, within PfGW456L13_3701at 4163.555 kb on - strand, within PfGW456L13_3701at 4163.645 kb on + strand, within PfGW456L13_3701at 4163.645 kb on + strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.646 kb on - strand, within PfGW456L13_3701at 4163.647 kb on + strand, within PfGW456L13_3701at 4163.647 kb on + strand, within PfGW456L13_3701at 4163.647 kb on + strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.648 kb on - strand, within PfGW456L13_3701at 4163.651 kb on + strand, within PfGW456L13_3701at 4163.651 kb on + strand, within PfGW456L13_3701at 4163.651 kb on + strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.652 kb on - strand, within PfGW456L13_3701at 4163.696 kb on + strand, within PfGW456L13_3701at 4163.696 kb on + strand, within PfGW456L13_3701at 4163.696 kb on + strand, within PfGW456L13_3701at 4163.697 kb on - strand, within PfGW456L13_3701at 4163.697 kb on - strand, within PfGW456L13_3701at 4163.697 kb on - strand, within PfGW456L13_3701at 4163.697 kb on - strand, within PfGW456L13_3701at 4163.697 kb on - strand, within PfGW456L13_3701at 4163.700 kb on - strand, within PfGW456L13_3701at 4163.747 kb on + strand, within PfGW456L13_3701at 4163.747 kb on + strand, within PfGW456L13_3701at 4163.748 kb on - strand, within PfGW456L13_3701at 4163.804 kb on + strand, within PfGW456L13_3701at 4163.805 kb on - strand, within PfGW456L13_3701at 4163.805 kb on - strand, within PfGW456L13_3701at 4163.806 kb on + strand, within PfGW456L13_3701at 4163.806 kb on + strand, within PfGW456L13_3701at 4163.806 kb on + strand, within PfGW456L13_3701at 4163.806 kb on + strand, within PfGW456L13_3701at 4163.878 kb on + strand, within PfGW456L13_3701at 4163.878 kb on + strand, within PfGW456L13_3701at 4163.878 kb on + strand, within PfGW456L13_3701at 4163.878 kb on + strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.879 kb on - strand, within PfGW456L13_3701at 4163.897 kb on + strand, within PfGW456L13_3701at 4163.945 kb on + strand, within PfGW456L13_3701at 4163.992 kb on + strand, within PfGW456L13_3701at 4164.047 kb on + strand, within PfGW456L13_3701at 4164.047 kb on + strand, within PfGW456L13_3701at 4164.047 kb on + strand, within PfGW456L13_3701at 4164.048 kb on - strand, within PfGW456L13_3701at 4164.048 kb on - strandat 4164.067 kb on + strand, within PfGW456L13_3701at 4164.087 kb on - strand, within PfGW456L13_3701at 4164.087 kb on - strand, within PfGW456L13_3701at 4164.149 kb on + strandat 4164.149 kb on + strandat 4164.150 kb on - strandat 4164.181 kb on + strandat 4164.181 kb on + strandat 4164.182 kb on - strandat 4164.197 kb on + strandat 4164.198 kb on - strandat 4164.198 kb on - strandat 4164.275 kb on + strandat 4164.276 kb on - strandat 4164.276 kb on - strandat 4164.276 kb on - strandat 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.713 kb on + strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.714 kb on - strand, within PfGW456L13_3702at 4164.837 kb on + strand, within PfGW456L13_3702at 4164.838 kb on - strand, within PfGW456L13_3702at 4165.052 kb on + strand, within PfGW456L13_3702at 4165.053 kb on - strand, within PfGW456L13_3702at 4165.053 kb on - strand, within PfGW456L13_3702at 4165.053 kb on - strand, within PfGW456L13_3702

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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4,162,630 + +0.0
4,162,630 + -1.9
4,162,652 - +1.7
4,162,669 + +0.6
4,162,670 - -0.1
4,162,670 - +1.3
4,162,670 - +0.3
4,162,670 - +0.3
4,162,678 + -1.2
4,162,678 + -0.2
4,162,691 + -0.0
4,162,709 - +1.7
4,162,709 - -3.7
4,162,822 - -1.9
4,162,925 + PfGW456L13_3700 0.22 -1.4
4,162,925 + PfGW456L13_3700 0.22 -2.4
4,162,925 + PfGW456L13_3700 0.22 -0.4
4,162,925 + PfGW456L13_3700 0.22 -0.6
4,162,926 - PfGW456L13_3700 0.22 +1.1
4,163,024 + PfGW456L13_3700 0.37 +2.0
4,163,025 - PfGW456L13_3700 0.37 +1.5
4,163,034 - PfGW456L13_3700 0.38 +1.7
4,163,034 - PfGW456L13_3700 0.38 -1.3
4,163,036 - PfGW456L13_3700 0.38 -0.9
4,163,093 + PfGW456L13_3700 0.47 +0.3
4,163,094 - PfGW456L13_3700 0.47 +1.2
4,163,162 + PfGW456L13_3700 0.57 -0.3
4,163,162 + PfGW456L13_3700 0.57 -1.1
4,163,163 - PfGW456L13_3700 0.57 +0.5
4,163,163 - PfGW456L13_3700 0.57 -0.1
4,163,254 - PfGW456L13_3700 0.70 +0.9
4,163,375 + PfGW456L13_3700 0.87 -0.2
4,163,430 - -0.2
4,163,430 - -0.8
4,163,486 + +0.9
4,163,487 - -0.1
4,163,487 - +0.5
4,163,487 - -0.1
4,163,517 - -2.6
4,163,554 + PfGW456L13_3701 0.11 -1.6
4,163,554 + PfGW456L13_3701 0.11 -2.1
4,163,554 + PfGW456L13_3701 0.11 -1.1
4,163,554 + PfGW456L13_3701 0.11 +0.6
4,163,555 - PfGW456L13_3701 0.12 -0.4
4,163,555 - PfGW456L13_3701 0.12 +0.9
4,163,645 + PfGW456L13_3701 0.24 -0.6
4,163,645 + PfGW456L13_3701 0.24 +0.8
4,163,646 - PfGW456L13_3701 0.25 +0.2
4,163,646 - PfGW456L13_3701 0.25 -0.3
4,163,646 - PfGW456L13_3701 0.25 -2.7
4,163,646 - PfGW456L13_3701 0.25 +1.2
4,163,647 + PfGW456L13_3701 0.25 +0.2
4,163,647 + PfGW456L13_3701 0.25 -0.9
4,163,647 + PfGW456L13_3701 0.25 -0.3
4,163,648 - PfGW456L13_3701 0.25 -0.2
4,163,648 - PfGW456L13_3701 0.25 +1.4
4,163,648 - PfGW456L13_3701 0.25 -1.4
4,163,648 - PfGW456L13_3701 0.25 -1.8
4,163,648 - PfGW456L13_3701 0.25 -0.5
4,163,648 - PfGW456L13_3701 0.25 -0.4
4,163,651 + PfGW456L13_3701 0.25 +0.6
4,163,651 + PfGW456L13_3701 0.25 -0.4
4,163,651 + PfGW456L13_3701 0.25 -3.8
4,163,652 - PfGW456L13_3701 0.25 -3.2
4,163,652 - PfGW456L13_3701 0.25 +0.6
4,163,652 - PfGW456L13_3701 0.25 +1.0
4,163,652 - PfGW456L13_3701 0.25 -3.2
4,163,652 - PfGW456L13_3701 0.25 +0.7
4,163,652 - PfGW456L13_3701 0.25 +0.2
4,163,652 - PfGW456L13_3701 0.25 +0.1
4,163,652 - PfGW456L13_3701 0.25 -0.7
4,163,652 - PfGW456L13_3701 0.25 -1.3
4,163,652 - PfGW456L13_3701 0.25 +0.9
4,163,696 + PfGW456L13_3701 0.32 -1.5
4,163,696 + PfGW456L13_3701 0.32 -0.4
4,163,696 + PfGW456L13_3701 0.32 -2.1
4,163,697 - PfGW456L13_3701 0.32 -0.1
4,163,697 - PfGW456L13_3701 0.32 +0.9
4,163,697 - PfGW456L13_3701 0.32 +0.9
4,163,697 - PfGW456L13_3701 0.32 +0.7
4,163,697 - PfGW456L13_3701 0.32 +1.5
4,163,700 - PfGW456L13_3701 0.32 +1.0
4,163,747 + PfGW456L13_3701 0.39 +0.2
4,163,747 + PfGW456L13_3701 0.39 -0.1
4,163,748 - PfGW456L13_3701 0.39 +1.5
4,163,804 + PfGW456L13_3701 0.47 +0.2
4,163,805 - PfGW456L13_3701 0.47 -1.3
4,163,805 - PfGW456L13_3701 0.47 +0.7
4,163,806 + PfGW456L13_3701 0.47 +0.3
4,163,806 + PfGW456L13_3701 0.47 -1.4
4,163,806 + PfGW456L13_3701 0.47 -0.5
4,163,806 + PfGW456L13_3701 0.47 +1.3
4,163,878 + PfGW456L13_3701 0.58 +0.6
4,163,878 + PfGW456L13_3701 0.58 +1.1
4,163,878 + PfGW456L13_3701 0.58 -1.4
4,163,878 + PfGW456L13_3701 0.58 -0.3
4,163,879 - PfGW456L13_3701 0.58 -1.8
4,163,879 - PfGW456L13_3701 0.58 -0.6
4,163,879 - PfGW456L13_3701 0.58 +0.1
4,163,879 - PfGW456L13_3701 0.58 +0.7
4,163,879 - PfGW456L13_3701 0.58 +1.1
4,163,879 - PfGW456L13_3701 0.58 +1.2
4,163,879 - PfGW456L13_3701 0.58 +0.1
4,163,897 + PfGW456L13_3701 0.61 -0.5
4,163,945 + PfGW456L13_3701 0.67 -2.1
4,163,992 + PfGW456L13_3701 0.74 +0.6
4,164,047 + PfGW456L13_3701 0.82 +0.0
4,164,047 + PfGW456L13_3701 0.82 -0.3
4,164,047 + PfGW456L13_3701 0.82 +0.1
4,164,048 - PfGW456L13_3701 0.82 -1.2
4,164,048 - +1.3
4,164,067 + PfGW456L13_3701 0.85 -1.3
4,164,087 - PfGW456L13_3701 0.88 -0.0
4,164,087 - PfGW456L13_3701 0.88 +1.7
4,164,149 + +0.3
4,164,149 + -1.6
4,164,150 - -2.3
4,164,181 + +0.6
4,164,181 + +1.0
4,164,182 - +0.1
4,164,197 + +0.2
4,164,198 - +1.5
4,164,198 - +1.7
4,164,275 + +1.8
4,164,276 - +0.5
4,164,276 - +0.9
4,164,276 - +0.6
4,164,713 + PfGW456L13_3702 0.48 +0.7
4,164,713 + PfGW456L13_3702 0.48 -2.0
4,164,713 + PfGW456L13_3702 0.48 +0.9
4,164,713 + PfGW456L13_3702 0.48 -0.7
4,164,713 + PfGW456L13_3702 0.48 -3.9
4,164,713 + PfGW456L13_3702 0.48 -4.4
4,164,714 - PfGW456L13_3702 0.48 +0.8
4,164,714 - PfGW456L13_3702 0.48 -0.4
4,164,714 - PfGW456L13_3702 0.48 -1.0
4,164,714 - PfGW456L13_3702 0.48 +0.7
4,164,714 - PfGW456L13_3702 0.48 -0.1
4,164,714 - PfGW456L13_3702 0.48 +0.9
4,164,714 - PfGW456L13_3702 0.48 -0.8
4,164,837 + PfGW456L13_3702 0.59 -0.1
4,164,838 - PfGW456L13_3702 0.59 +0.3
4,165,052 + PfGW456L13_3702 0.78 -0.7
4,165,053 - PfGW456L13_3702 0.78 -0.7
4,165,053 - PfGW456L13_3702 0.78 +0.8
4,165,053 - PfGW456L13_3702 0.78 +0.9

Or see this region's nucleotide sequence