Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3324

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3323 and PfGW456L13_3324 are separated by 491 nucleotidesPfGW456L13_3324 and PfGW456L13_3325 are separated by 424 nucleotides PfGW456L13_3323 - FIG002465: BNR repeat protein, at 3,734,146 to 3,735,183 _3323 PfGW456L13_3324 - FIG00461010: hypothetical protein, at 3,735,675 to 3,736,007 _3324 PfGW456L13_3325 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 3,736,432 to 3,739,089 _3325 Position (kb) 3735 3736 3737Strain fitness (log2 ratio) -2 -1 0 1 2at 3734.951 kb on + strand, within PfGW456L13_3323at 3734.952 kb on - strand, within PfGW456L13_3323at 3735.050 kb on + strand, within PfGW456L13_3323at 3735.050 kb on + strand, within PfGW456L13_3323at 3735.051 kb on - strand, within PfGW456L13_3323at 3735.171 kb on + strandat 3735.171 kb on + strandat 3735.198 kb on + strandat 3735.199 kb on - strandat 3735.199 kb on - strandat 3735.213 kb on + strandat 3735.213 kb on + strandat 3735.213 kb on + strandat 3735.214 kb on - strandat 3735.216 kb on + strandat 3735.216 kb on + strandat 3735.216 kb on + strandat 3735.216 kb on + strandat 3735.216 kb on + strandat 3735.217 kb on - strandat 3735.217 kb on - strandat 3735.217 kb on - strandat 3735.217 kb on - strandat 3735.222 kb on + strandat 3735.222 kb on + strandat 3735.222 kb on + strandat 3735.223 kb on - strandat 3735.284 kb on + strandat 3735.284 kb on + strandat 3735.284 kb on + strandat 3735.284 kb on + strandat 3735.285 kb on - strandat 3735.285 kb on - strandat 3735.285 kb on - strandat 3735.285 kb on - strandat 3735.285 kb on - strandat 3735.285 kb on - strandat 3735.370 kb on + strandat 3735.418 kb on + strandat 3735.425 kb on + strandat 3735.426 kb on - strandat 3735.426 kb on - strandat 3735.454 kb on + strandat 3735.473 kb on + strandat 3735.473 kb on + strandat 3735.473 kb on + strandat 3735.473 kb on + strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.474 kb on - strandat 3735.478 kb on - strandat 3735.478 kb on - strandat 3735.516 kb on + strandat 3735.516 kb on + strandat 3735.516 kb on + strandat 3735.517 kb on - strandat 3735.517 kb on - strandat 3735.517 kb on - strandat 3735.517 kb on - strandat 3735.517 kb on - strandat 3735.517 kb on - strandat 3735.520 kb on + strandat 3735.521 kb on - strandat 3735.560 kb on + strandat 3735.759 kb on + strand, within PfGW456L13_3324at 3735.759 kb on + strand, within PfGW456L13_3324at 3735.759 kb on + strand, within PfGW456L13_3324at 3735.759 kb on + strand, within PfGW456L13_3324at 3735.760 kb on - strand, within PfGW456L13_3324at 3735.760 kb on - strand, within PfGW456L13_3324at 3735.760 kb on - strand, within PfGW456L13_3324at 3735.924 kb on + strand, within PfGW456L13_3324at 3735.925 kb on - strand, within PfGW456L13_3324at 3735.925 kb on - strand, within PfGW456L13_3324at 3735.958 kb on + strand, within PfGW456L13_3324at 3735.958 kb on + strand, within PfGW456L13_3324at 3736.272 kb on + strandat 3736.272 kb on + strandat 3736.276 kb on + strandat 3736.371 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.375 kb on + strandat 3736.538 kb on + strandat 3736.538 kb on + strandat 3736.539 kb on - strandat 3736.539 kb on - strandat 3736.988 kb on + strand, within PfGW456L13_3325

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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3,734,951 + PfGW456L13_3323 0.78 -1.9
3,734,952 - PfGW456L13_3323 0.78 +0.5
3,735,050 + PfGW456L13_3323 0.87 +1.4
3,735,050 + PfGW456L13_3323 0.87 -0.1
3,735,051 - PfGW456L13_3323 0.87 +0.1
3,735,171 + +1.2
3,735,171 + -2.4
3,735,198 + -0.7
3,735,199 - +0.4
3,735,199 - -1.7
3,735,213 + -1.5
3,735,213 + -0.6
3,735,213 + -2.2
3,735,214 - -0.4
3,735,216 + +0.2
3,735,216 + -0.2
3,735,216 + +1.0
3,735,216 + -0.9
3,735,216 + -1.8
3,735,217 - +0.5
3,735,217 - +2.6
3,735,217 - +0.2
3,735,217 - +1.1
3,735,222 + +1.0
3,735,222 + -1.8
3,735,222 + +0.9
3,735,223 - +0.2
3,735,284 + +0.9
3,735,284 + +0.6
3,735,284 + +0.1
3,735,284 + -0.2
3,735,285 - -1.5
3,735,285 - -0.3
3,735,285 - -2.2
3,735,285 - -0.1
3,735,285 - -0.8
3,735,285 - +0.2
3,735,370 + +0.8
3,735,418 + -0.1
3,735,425 + -0.1
3,735,426 - -1.7
3,735,426 - +0.9
3,735,454 + -2.2
3,735,473 + -0.9
3,735,473 + +1.5
3,735,473 + +0.1
3,735,473 + -0.1
3,735,474 - -2.2
3,735,474 - +0.4
3,735,474 - +0.0
3,735,474 - -2.2
3,735,474 - -0.8
3,735,474 - +1.1
3,735,474 - -0.6
3,735,474 - -1.1
3,735,478 - +0.8
3,735,478 - -0.5
3,735,516 + -1.7
3,735,516 + +1.5
3,735,516 + -0.4
3,735,517 - -0.9
3,735,517 - -0.5
3,735,517 - +0.3
3,735,517 - -0.4
3,735,517 - +0.6
3,735,517 - +1.6
3,735,520 + +0.4
3,735,521 - -0.5
3,735,560 + -1.9
3,735,759 + PfGW456L13_3324 0.25 -1.6
3,735,759 + PfGW456L13_3324 0.25 -0.8
3,735,759 + PfGW456L13_3324 0.25 -0.1
3,735,759 + PfGW456L13_3324 0.25 +1.0
3,735,760 - PfGW456L13_3324 0.26 +1.1
3,735,760 - PfGW456L13_3324 0.26 +0.6
3,735,760 - PfGW456L13_3324 0.26 -1.8
3,735,924 + PfGW456L13_3324 0.75 +0.6
3,735,925 - PfGW456L13_3324 0.75 +0.9
3,735,925 - PfGW456L13_3324 0.75 +0.6
3,735,958 + PfGW456L13_3324 0.85 +0.9
3,735,958 + PfGW456L13_3324 0.85 +0.0
3,736,272 + -0.1
3,736,272 + +2.0
3,736,276 + -0.4
3,736,371 + +1.0
3,736,375 + +0.7
3,736,375 + -1.8
3,736,375 + +1.0
3,736,375 + -1.5
3,736,375 + -2.2
3,736,375 + +0.1
3,736,375 + +0.9
3,736,375 + +1.1
3,736,538 + +0.4
3,736,538 + +1.2
3,736,539 - -0.1
3,736,539 - -0.6
3,736,988 + PfGW456L13_3325 0.21 -0.8

Or see this region's nucleotide sequence