Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2638

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2637 and PfGW456L13_2638 are separated by 124 nucleotidesPfGW456L13_2638 and PfGW456L13_2639 overlap by 4 nucleotides PfGW456L13_2637 - Adenylosuccinate lyase (EC 4.3.2.2), at 2,937,476 to 2,938,846 _2637 PfGW456L13_2638 - FIG002903: a protein of unknown function perhaps involved in purine metabolism, at 2,938,971 to 2,939,594 _2638 PfGW456L13_2639 - tRNA-specific 2-thiouridylase MnmA, at 2,939,591 to 2,940,724 _2639 Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2938.932 kb on + strandat 2938.932 kb on + strandat 2938.932 kb on + strandat 2938.936 kb on - strandat 2938.942 kb on - strandat 2939.188 kb on + strand, within PfGW456L13_2638at 2939.434 kb on + strand, within PfGW456L13_2638at 2939.434 kb on + strand, within PfGW456L13_2638at 2939.434 kb on + strand, within PfGW456L13_2638at 2939.434 kb on + strandat 2939.434 kb on + strand, within PfGW456L13_2638at 2939.434 kb on + strand, within PfGW456L13_2638at 2939.435 kb on - strand, within PfGW456L13_2638at 2939.435 kb on - strand, within PfGW456L13_2638at 2939.435 kb on - strand, within PfGW456L13_2638at 2939.435 kb on - strand, within PfGW456L13_2638at 2939.594 kb on + strandat 2939.595 kb on - strandat 2939.595 kb on - strandat 2939.595 kb on - strandat 2939.627 kb on + strandat 2939.628 kb on - strandat 2939.628 kb on - strandat 2939.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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2,938,932 + +2.8
2,938,932 + +2.2
2,938,932 + +2.5
2,938,936 - +2.0
2,938,942 - +1.3
2,939,188 + PfGW456L13_2638 0.35 +1.2
2,939,434 + PfGW456L13_2638 0.74 -0.0
2,939,434 + PfGW456L13_2638 0.74 +0.2
2,939,434 + PfGW456L13_2638 0.74 -0.2
2,939,434 + +0.1
2,939,434 + PfGW456L13_2638 0.74 -0.3
2,939,434 + PfGW456L13_2638 0.74 +1.2
2,939,435 - PfGW456L13_2638 0.74 +1.7
2,939,435 - PfGW456L13_2638 0.74 +1.3
2,939,435 - PfGW456L13_2638 0.74 -2.0
2,939,435 - PfGW456L13_2638 0.74 +1.6
2,939,594 + +0.5
2,939,595 - +4.1
2,939,595 - -2.2
2,939,595 - +0.1
2,939,627 + +0.8
2,939,628 - +1.9
2,939,628 - +1.8
2,939,628 - +1.3

Or see this region's nucleotide sequence