Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_152 and PfGW456L13_153 are separated by 96 nucleotides PfGW456L13_153 and PfGW456L13_154 are separated by 12 nucleotides PfGW456L13_154 and PfGW456L13_155 are separated by 93 nucleotides
PfGW456L13_152 - HflK protein, at 176,023 to 177,198
_152
PfGW456L13_153 - GTP-binding protein HflX, at 177,295 to 178,596
_153
PfGW456L13_154 - RNA-binding protein Hfq, at 178,609 to 178,869
_154
PfGW456L13_155 - tRNA dimethylallyltransferase (EC 2.5.1.75), at 178,963 to 179,934
_155
Position (kb) 177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.418 kb on - strand, within PfGW456L13_152 at 176.418 kb on - strand, within PfGW456L13_152 at 176.515 kb on + strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.937 kb on - strand, within PfGW456L13_152 at 177.253 kb on - strand at 177.297 kb on - strand at 177.646 kb on - strand, within PfGW456L13_153 at 177.646 kb on - strand, within PfGW456L13_153 at 177.647 kb on + strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.648 kb on - strand, within PfGW456L13_153 at 177.787 kb on - strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.978 kb on + strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 177.979 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.195 kb on - strand, within PfGW456L13_153 at 178.267 kb on - strand, within PfGW456L13_153 at 178.311 kb on + strand, within PfGW456L13_153 at 178.311 kb on + strand, within PfGW456L13_153 at 178.312 kb on - strand, within PfGW456L13_153 at 178.607 kb on + strand at 178.608 kb on - strand at 178.608 kb on - strand at 178.608 kb on - strand at 178.608 kb on - strand at 178.618 kb on - strand at 178.896 kb on - strand at 178.898 kb on - strand at 178.898 kb on - strand at 178.898 kb on - strand at 178.992 kb on - strand at 179.148 kb on - strand, within PfGW456L13_155 at 179.148 kb on - strand, within PfGW456L13_155 at 179.170 kb on + strand, within PfGW456L13_155 at 179.171 kb on - strand, within PfGW456L13_155 at 179.171 kb on - strand, within PfGW456L13_155 at 179.179 kb on + strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.180 kb on - strand, within PfGW456L13_155 at 179.212 kb on - strand, within PfGW456L13_155 at 179.275 kb on - strand, within PfGW456L13_155 at 179.291 kb on - strand, within PfGW456L13_155
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 176,418 - PfGW456L13_152 0.34 +2.1 176,418 - PfGW456L13_152 0.34 +2.0 176,515 + PfGW456L13_152 0.42 -1.7 176,736 - PfGW456L13_152 0.61 +2.1 176,736 - PfGW456L13_152 0.61 +3.3 176,736 - PfGW456L13_152 0.61 +0.7 176,832 - PfGW456L13_152 0.69 -0.3 176,832 - PfGW456L13_152 0.69 +0.3 176,832 - PfGW456L13_152 0.69 +1.5 176,832 - PfGW456L13_152 0.69 +2.8 176,832 - PfGW456L13_152 0.69 -1.2 176,856 - PfGW456L13_152 0.71 -0.7 176,856 - PfGW456L13_152 0.71 -1.2 176,856 - PfGW456L13_152 0.71 -0.4 176,856 - PfGW456L13_152 0.71 +0.7 176,886 - PfGW456L13_152 0.73 +0.3 176,886 - PfGW456L13_152 0.73 -1.5 176,889 - PfGW456L13_152 0.74 -0.6 176,889 - PfGW456L13_152 0.74 -0.2 176,937 - PfGW456L13_152 0.78 -1.9 177,253 - +0.9 177,297 - +0.8 177,646 - PfGW456L13_153 0.27 +0.5 177,646 - PfGW456L13_153 0.27 +1.1 177,647 + PfGW456L13_153 0.27 +0.8 177,648 - PfGW456L13_153 0.27 +2.0 177,648 - PfGW456L13_153 0.27 -0.1 177,648 - PfGW456L13_153 0.27 +1.6 177,648 - PfGW456L13_153 0.27 -0.3 177,648 - PfGW456L13_153 0.27 +1.0 177,787 - PfGW456L13_153 0.38 +0.6 177,978 + PfGW456L13_153 0.52 +1.2 177,978 + PfGW456L13_153 0.52 +0.1 177,978 + PfGW456L13_153 0.52 -1.5 177,978 + PfGW456L13_153 0.52 +0.4 177,979 - PfGW456L13_153 0.53 +0.5 177,979 - PfGW456L13_153 0.53 +1.4 177,979 - PfGW456L13_153 0.53 +1.3 177,979 - PfGW456L13_153 0.53 +1.2 178,195 - PfGW456L13_153 0.69 +0.8 178,195 - PfGW456L13_153 0.69 +0.7 178,195 - PfGW456L13_153 0.69 +1.1 178,267 - PfGW456L13_153 0.75 +1.9 178,311 + PfGW456L13_153 0.78 +2.0 178,311 + PfGW456L13_153 0.78 -0.8 178,312 - PfGW456L13_153 0.78 +1.0 178,607 + -2.1 178,608 - +1.4 178,608 - +2.4 178,608 - +2.1 178,608 - +1.8 178,618 - +0.7 178,896 - +1.3 178,898 - +0.4 178,898 - +0.5 178,898 - -2.7 178,992 - +0.1 179,148 - PfGW456L13_155 0.19 -0.5 179,148 - PfGW456L13_155 0.19 -0.7 179,170 + PfGW456L13_155 0.21 -0.7 179,171 - PfGW456L13_155 0.21 -1.7 179,171 - PfGW456L13_155 0.21 -2.1 179,179 + PfGW456L13_155 0.22 -0.7 179,180 - PfGW456L13_155 0.22 -0.9 179,180 - PfGW456L13_155 0.22 -3.0 179,180 - PfGW456L13_155 0.22 -1.1 179,180 - PfGW456L13_155 0.22 -2.9 179,212 - PfGW456L13_155 0.26 -0.3 179,275 - PfGW456L13_155 0.32 -2.7 179,291 - PfGW456L13_155 0.34 -1.6
Or see this region's nucleotide sequence