Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1427

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1425 and PfGW456L13_1426 are separated by 102 nucleotidesPfGW456L13_1426 and PfGW456L13_1427 are separated by 36 nucleotidesPfGW456L13_1427 and PfGW456L13_1428 overlap by 4 nucleotidesPfGW456L13_1428 and PfGW456L13_1429 are separated by 140 nucleotides PfGW456L13_1425 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27), at 1,573,701 to 1,575,602 _1425 PfGW456L13_1426 - Transcriptional regulator, TetR family, at 1,575,705 to 1,576,382 _1426 PfGW456L13_1427 - Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25), at 1,576,419 to 1,577,282 _1427 PfGW456L13_1428 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 1,577,279 to 1,577,719 _1428 PfGW456L13_1429 - Transcriptional regulator, LysR family, at 1,577,860 to 1,578,771 _1429 Position (kb) 1576 1577 1578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1575.457 kb on - strandat 1575.457 kb on - strandat 1575.457 kb on - strandat 1575.457 kb on - strandat 1575.600 kb on + strandat 1575.601 kb on - strandat 1575.604 kb on + strandat 1575.604 kb on + strandat 1575.604 kb on + strandat 1575.612 kb on - strandat 1575.740 kb on - strandat 1575.876 kb on - strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.900 kb on + strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.901 kb on - strand, within PfGW456L13_1426at 1575.904 kb on - strand, within PfGW456L13_1426at 1575.906 kb on + strand, within PfGW456L13_1426at 1575.906 kb on + strand, within PfGW456L13_1426at 1575.906 kb on + strand, within PfGW456L13_1426at 1575.907 kb on - strand, within PfGW456L13_1426at 1575.907 kb on - strand, within PfGW456L13_1426at 1575.907 kb on - strand, within PfGW456L13_1426at 1575.907 kb on - strand, within PfGW456L13_1426at 1575.907 kb on - strand, within PfGW456L13_1426at 1575.917 kb on + strandat 1575.930 kb on + strand, within PfGW456L13_1426at 1575.931 kb on - strand, within PfGW456L13_1426at 1575.931 kb on - strand, within PfGW456L13_1426at 1575.931 kb on - strand, within PfGW456L13_1426at 1575.931 kb on - strand, within PfGW456L13_1426at 1575.954 kb on + strand, within PfGW456L13_1426at 1575.955 kb on - strand, within PfGW456L13_1426at 1576.110 kb on + strand, within PfGW456L13_1426at 1576.111 kb on - strand, within PfGW456L13_1426at 1576.152 kb on - strand, within PfGW456L13_1426at 1576.152 kb on - strand, within PfGW456L13_1426at 1576.260 kb on + strand, within PfGW456L13_1426at 1576.261 kb on - strand, within PfGW456L13_1426at 1576.322 kb on + strandat 1576.322 kb on + strandat 1576.323 kb on - strandat 1576.323 kb on - strandat 1576.323 kb on - strandat 1576.323 kb on - strandat 1576.470 kb on + strandat 1576.471 kb on - strandat 1576.589 kb on - strand, within PfGW456L13_1427at 1576.589 kb on - strand, within PfGW456L13_1427at 1576.818 kb on + strand, within PfGW456L13_1427at 1576.818 kb on + strand, within PfGW456L13_1427at 1576.819 kb on - strand, within PfGW456L13_1427at 1576.819 kb on - strand, within PfGW456L13_1427at 1576.819 kb on - strand, within PfGW456L13_1427at 1576.819 kb on - strand, within PfGW456L13_1427at 1576.819 kb on - strand, within PfGW456L13_1427at 1576.819 kb on - strand, within PfGW456L13_1427at 1576.879 kb on - strand, within PfGW456L13_1427at 1577.064 kb on + strand, within PfGW456L13_1427at 1577.064 kb on + strand, within PfGW456L13_1427at 1577.064 kb on + strand, within PfGW456L13_1427at 1577.064 kb on + strand, within PfGW456L13_1427at 1577.064 kb on + strand, within PfGW456L13_1427at 1577.065 kb on - strand, within PfGW456L13_1427at 1577.065 kb on - strand, within PfGW456L13_1427at 1577.065 kb on - strand, within PfGW456L13_1427at 1577.065 kb on - strand, within PfGW456L13_1427at 1577.080 kb on + strand, within PfGW456L13_1427at 1577.081 kb on - strand, within PfGW456L13_1427at 1577.081 kb on - strand, within PfGW456L13_1427at 1577.168 kb on - strand, within PfGW456L13_1427at 1577.649 kb on + strand, within PfGW456L13_1428at 1577.650 kb on - strand, within PfGW456L13_1428at 1577.650 kb on - strand, within PfGW456L13_1428at 1577.739 kb on - strandat 1577.818 kb on + strandat 1577.818 kb on + strandat 1577.818 kb on + strandat 1577.819 kb on - strandat 1577.819 kb on - strandat 1577.819 kb on - strandat 1577.914 kb on + strandat 1577.914 kb on + strandat 1577.914 kb on + strandat 1577.914 kb on + strandat 1577.914 kb on + strandat 1577.915 kb on - strandat 1577.915 kb on - strandat 1577.915 kb on - strandat 1577.915 kb on - strandat 1577.915 kb on - strandat 1577.934 kb on - strandat 1577.944 kb on - strandat 1578.019 kb on - strand, within PfGW456L13_1429at 1578.026 kb on + strand, within PfGW456L13_1429

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
1,575,457 - -1.2
1,575,457 - +0.9
1,575,457 - +0.5
1,575,457 - -1.7
1,575,600 + +0.1
1,575,601 - -0.9
1,575,604 + -2.2
1,575,604 + +0.2
1,575,604 + +0.2
1,575,612 - +0.6
1,575,740 - -0.4
1,575,876 - PfGW456L13_1426 0.25 -0.0
1,575,900 + PfGW456L13_1426 0.29 -0.1
1,575,900 + PfGW456L13_1426 0.29 -1.6
1,575,900 + PfGW456L13_1426 0.29 -1.2
1,575,900 + PfGW456L13_1426 0.29 -3.2
1,575,900 + PfGW456L13_1426 0.29 -0.2
1,575,900 + PfGW456L13_1426 0.29 +0.4
1,575,900 + PfGW456L13_1426 0.29 +0.4
1,575,900 + PfGW456L13_1426 0.29 +0.1
1,575,900 + PfGW456L13_1426 0.29 +0.0
1,575,900 + PfGW456L13_1426 0.29 -0.2
1,575,900 + PfGW456L13_1426 0.29 -0.6
1,575,900 + PfGW456L13_1426 0.29 +0.2
1,575,900 + PfGW456L13_1426 0.29 -0.4
1,575,900 + PfGW456L13_1426 0.29 +0.4
1,575,900 + PfGW456L13_1426 0.29 +1.0
1,575,901 - PfGW456L13_1426 0.29 -0.5
1,575,901 - PfGW456L13_1426 0.29 -0.4
1,575,901 - PfGW456L13_1426 0.29 +0.2
1,575,901 - PfGW456L13_1426 0.29 -0.3
1,575,901 - PfGW456L13_1426 0.29 +1.2
1,575,901 - PfGW456L13_1426 0.29 -0.2
1,575,901 - PfGW456L13_1426 0.29 -0.4
1,575,901 - PfGW456L13_1426 0.29 -0.2
1,575,901 - PfGW456L13_1426 0.29 +0.7
1,575,901 - PfGW456L13_1426 0.29 +0.4
1,575,901 - PfGW456L13_1426 0.29 -0.6
1,575,901 - PfGW456L13_1426 0.29 +1.6
1,575,901 - PfGW456L13_1426 0.29 +1.3
1,575,901 - PfGW456L13_1426 0.29 -0.5
1,575,901 - PfGW456L13_1426 0.29 +1.1
1,575,901 - PfGW456L13_1426 0.29 -0.5
1,575,901 - PfGW456L13_1426 0.29 -1.0
1,575,904 - PfGW456L13_1426 0.29 -0.3
1,575,906 + PfGW456L13_1426 0.30 +1.3
1,575,906 + PfGW456L13_1426 0.30 +0.3
1,575,906 + PfGW456L13_1426 0.30 +1.4
1,575,907 - PfGW456L13_1426 0.30 -2.0
1,575,907 - PfGW456L13_1426 0.30 +0.2
1,575,907 - PfGW456L13_1426 0.30 +0.2
1,575,907 - PfGW456L13_1426 0.30 -1.8
1,575,907 - PfGW456L13_1426 0.30 +0.2
1,575,917 + +1.8
1,575,930 + PfGW456L13_1426 0.33 +0.1
1,575,931 - PfGW456L13_1426 0.33 -1.4
1,575,931 - PfGW456L13_1426 0.33 -0.3
1,575,931 - PfGW456L13_1426 0.33 +0.5
1,575,931 - PfGW456L13_1426 0.33 +0.6
1,575,954 + PfGW456L13_1426 0.37 +0.6
1,575,955 - PfGW456L13_1426 0.37 +0.9
1,576,110 + PfGW456L13_1426 0.60 -0.7
1,576,111 - PfGW456L13_1426 0.60 +0.5
1,576,152 - PfGW456L13_1426 0.66 +0.7
1,576,152 - PfGW456L13_1426 0.66 -2.8
1,576,260 + PfGW456L13_1426 0.82 -0.4
1,576,261 - PfGW456L13_1426 0.82 -2.3
1,576,322 + +0.7
1,576,322 + -1.0
1,576,323 - -0.1
1,576,323 - +0.0
1,576,323 - -0.4
1,576,323 - +0.2
1,576,470 + +0.6
1,576,471 - +0.9
1,576,589 - PfGW456L13_1427 0.20 +0.6
1,576,589 - PfGW456L13_1427 0.20 +0.1
1,576,818 + PfGW456L13_1427 0.46 +0.6
1,576,818 + PfGW456L13_1427 0.46 -0.1
1,576,819 - PfGW456L13_1427 0.46 -1.7
1,576,819 - PfGW456L13_1427 0.46 +1.1
1,576,819 - PfGW456L13_1427 0.46 +1.3
1,576,819 - PfGW456L13_1427 0.46 -3.5
1,576,819 - PfGW456L13_1427 0.46 +0.6
1,576,819 - PfGW456L13_1427 0.46 -0.9
1,576,879 - PfGW456L13_1427 0.53 -0.2
1,577,064 + PfGW456L13_1427 0.75 -1.5
1,577,064 + PfGW456L13_1427 0.75 +0.4
1,577,064 + PfGW456L13_1427 0.75 +0.8
1,577,064 + PfGW456L13_1427 0.75 +1.5
1,577,064 + PfGW456L13_1427 0.75 -0.5
1,577,065 - PfGW456L13_1427 0.75 -0.1
1,577,065 - PfGW456L13_1427 0.75 +0.5
1,577,065 - PfGW456L13_1427 0.75 +0.5
1,577,065 - PfGW456L13_1427 0.75 +1.2
1,577,080 + PfGW456L13_1427 0.77 -0.8
1,577,081 - PfGW456L13_1427 0.77 -0.6
1,577,081 - PfGW456L13_1427 0.77 +0.7
1,577,168 - PfGW456L13_1427 0.87 +0.4
1,577,649 + PfGW456L13_1428 0.84 -0.2
1,577,650 - PfGW456L13_1428 0.84 -0.0
1,577,650 - PfGW456L13_1428 0.84 +0.1
1,577,739 - +0.8
1,577,818 + -0.4
1,577,818 + +0.2
1,577,818 + -2.1
1,577,819 - -0.9
1,577,819 - +0.2
1,577,819 - -2.7
1,577,914 + -1.6
1,577,914 + -1.1
1,577,914 + -0.1
1,577,914 + +0.8
1,577,914 + +1.6
1,577,915 - +1.1
1,577,915 - +0.3
1,577,915 - -0.8
1,577,915 - -1.6
1,577,915 - -0.1
1,577,934 - -0.8
1,577,944 - -0.8
1,578,019 - PfGW456L13_1429 0.17 +0.8
1,578,026 + PfGW456L13_1429 0.18 -0.0

Or see this region's nucleotide sequence