Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1158

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1157 and PfGW456L13_1158 are separated by 169 nucleotidesPfGW456L13_1158 and PfGW456L13_1159 are separated by 287 nucleotidesPfGW456L13_1159 and PfGW456L13_1160 overlap by 8 nucleotides PfGW456L13_1157 - transcriptional regulator, MerR family, at 1,288,183 to 1,289,112 _1157 PfGW456L13_1158 - Acetylornithine aminotransferase (EC 2.6.1.11), at 1,289,282 to 1,290,565 _1158 PfGW456L13_1159 - Putative cytoplasmic protein, at 1,290,853 to 1,291,173 _1159 PfGW456L13_1160 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 1,291,166 to 1,291,486 _1160 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1288.632 kb on - strand, within PfGW456L13_1157at 1288.632 kb on - strand, within PfGW456L13_1157at 1288.632 kb on - strand, within PfGW456L13_1157at 1288.632 kb on - strand, within PfGW456L13_1157at 1288.673 kb on + strand, within PfGW456L13_1157at 1288.674 kb on - strand, within PfGW456L13_1157at 1288.674 kb on - strand, within PfGW456L13_1157at 1288.674 kb on - strand, within PfGW456L13_1157at 1288.739 kb on + strand, within PfGW456L13_1157at 1288.739 kb on + strand, within PfGW456L13_1157at 1288.740 kb on - strand, within PfGW456L13_1157at 1288.822 kb on + strand, within PfGW456L13_1157at 1288.822 kb on + strand, within PfGW456L13_1157at 1288.822 kb on + strand, within PfGW456L13_1157at 1288.822 kb on + strand, within PfGW456L13_1157at 1288.823 kb on - strand, within PfGW456L13_1157at 1288.823 kb on - strand, within PfGW456L13_1157at 1288.823 kb on - strand, within PfGW456L13_1157at 1288.823 kb on - strand, within PfGW456L13_1157at 1288.823 kb on - strand, within PfGW456L13_1157at 1288.919 kb on + strand, within PfGW456L13_1157at 1288.919 kb on + strand, within PfGW456L13_1157at 1288.919 kb on + strand, within PfGW456L13_1157at 1288.919 kb on + strand, within PfGW456L13_1157at 1288.927 kb on - strand, within PfGW456L13_1157at 1288.927 kb on - strand, within PfGW456L13_1157at 1289.075 kb on + strandat 1289.075 kb on + strandat 1289.076 kb on - strandat 1289.116 kb on + strandat 1289.195 kb on + strandat 1289.220 kb on - strandat 1289.220 kb on - strandat 1289.237 kb on + strandat 1289.237 kb on + strandat 1289.237 kb on + strandat 1289.238 kb on - strandat 1289.241 kb on + strandat 1289.241 kb on + strandat 1289.241 kb on + strandat 1289.241 kb on + strandat 1289.241 kb on + strandat 1289.241 kb on + strandat 1289.242 kb on - strandat 1289.242 kb on - strandat 1289.242 kb on - strandat 1289.242 kb on - strandat 1289.242 kb on - strandat 1289.242 kb on - strandat 1289.245 kb on + strandat 1289.245 kb on + strandat 1289.245 kb on + strandat 1289.246 kb on - strandat 1289.246 kb on - strandat 1289.246 kb on - strandat 1289.250 kb on - strandat 1289.379 kb on - strandat 1289.379 kb on - strandat 1289.379 kb on - strandat 1289.462 kb on + strand, within PfGW456L13_1158at 1289.463 kb on - strand, within PfGW456L13_1158at 1289.463 kb on - strand, within PfGW456L13_1158at 1289.506 kb on + strand, within PfGW456L13_1158at 1289.639 kb on + strand, within PfGW456L13_1158at 1289.639 kb on + strand, within PfGW456L13_1158at 1289.639 kb on + strand, within PfGW456L13_1158at 1289.639 kb on + strand, within PfGW456L13_1158at 1289.640 kb on - strand, within PfGW456L13_1158at 1289.640 kb on - strand, within PfGW456L13_1158at 1289.640 kb on - strand, within PfGW456L13_1158at 1289.692 kb on + strand, within PfGW456L13_1158at 1289.692 kb on + strand, within PfGW456L13_1158at 1289.892 kb on + strand, within PfGW456L13_1158at 1289.951 kb on + strand, within PfGW456L13_1158at 1289.952 kb on - strand, within PfGW456L13_1158at 1289.952 kb on - strand, within PfGW456L13_1158at 1289.952 kb on - strand, within PfGW456L13_1158at 1290.081 kb on + strand, within PfGW456L13_1158at 1290.081 kb on + strand, within PfGW456L13_1158at 1290.081 kb on + strand, within PfGW456L13_1158at 1290.081 kb on + strand, within PfGW456L13_1158at 1290.082 kb on - strand, within PfGW456L13_1158at 1290.082 kb on - strand, within PfGW456L13_1158at 1290.082 kb on - strand, within PfGW456L13_1158at 1290.082 kb on - strand, within PfGW456L13_1158at 1290.459 kb on + strandat 1290.460 kb on - strandat 1290.460 kb on - strandat 1290.580 kb on + strandat 1290.580 kb on + strandat 1290.580 kb on + strandat 1290.580 kb on + strandat 1290.580 kb on + strandat 1290.580 kb on + strandat 1290.581 kb on - strandat 1290.581 kb on - strandat 1290.581 kb on - strandat 1290.608 kb on + strandat 1290.608 kb on + strandat 1290.608 kb on + strandat 1290.608 kb on + strandat 1290.608 kb on + strandat 1290.609 kb on - strandat 1290.701 kb on + strandat 1290.701 kb on + strandat 1290.712 kb on + strandat 1290.713 kb on - strandat 1290.988 kb on - strand, within PfGW456L13_1159at 1291.018 kb on + strand, within PfGW456L13_1159at 1291.019 kb on - strand, within PfGW456L13_1159at 1291.053 kb on + strand, within PfGW456L13_1159at 1291.053 kb on + strand, within PfGW456L13_1159at 1291.054 kb on - strand, within PfGW456L13_1159at 1291.054 kb on - strand, within PfGW456L13_1159at 1291.054 kb on - strand, within PfGW456L13_1159at 1291.054 kb on - strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.099 kb on + strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strandat 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strandat 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.100 kb on - strand, within PfGW456L13_1159at 1291.160 kb on + strandat 1291.160 kb on + strandat 1291.161 kb on - strandat 1291.161 kb on - strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.163 kb on + strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.164 kb on - strandat 1291.226 kb on + strand, within PfGW456L13_1160at 1291.226 kb on + strand, within PfGW456L13_1160at 1291.226 kb on + strand, within PfGW456L13_1160at 1291.226 kb on + strand, within PfGW456L13_1160at 1291.226 kb on + strand, within PfGW456L13_1160at 1291.226 kb on + strand, within PfGW456L13_1160at 1291.226 kb on + strand, within PfGW456L13_1160at 1291.227 kb on - strand, within PfGW456L13_1160at 1291.227 kb on - strand, within PfGW456L13_1160at 1291.227 kb on - strand, within PfGW456L13_1160at 1291.227 kb on - strand, within PfGW456L13_1160at 1291.227 kb on - strand, within PfGW456L13_1160at 1291.233 kb on + strand, within PfGW456L13_1160at 1291.233 kb on + strand, within PfGW456L13_1160at 1291.367 kb on + strand, within PfGW456L13_1160at 1291.476 kb on + strandat 1291.477 kb on - strandat 1291.525 kb on + strandat 1291.525 kb on + strandat 1291.525 kb on + strandat 1291.525 kb on + strandat 1291.526 kb on - strandat 1291.532 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,288,632 - PfGW456L13_1157 0.48 -0.2
1,288,632 - PfGW456L13_1157 0.48 +0.0
1,288,632 - PfGW456L13_1157 0.48 -0.4
1,288,632 - PfGW456L13_1157 0.48 +0.2
1,288,673 + PfGW456L13_1157 0.53 -3.8
1,288,674 - PfGW456L13_1157 0.53 -0.6
1,288,674 - PfGW456L13_1157 0.53 -2.8
1,288,674 - PfGW456L13_1157 0.53 -0.1
1,288,739 + PfGW456L13_1157 0.60 +0.6
1,288,739 + PfGW456L13_1157 0.60 +1.0
1,288,740 - PfGW456L13_1157 0.60 -0.1
1,288,822 + PfGW456L13_1157 0.69 -1.3
1,288,822 + PfGW456L13_1157 0.69 -1.6
1,288,822 + PfGW456L13_1157 0.69 +0.8
1,288,822 + PfGW456L13_1157 0.69 +0.3
1,288,823 - PfGW456L13_1157 0.69 -0.7
1,288,823 - PfGW456L13_1157 0.69 -2.0
1,288,823 - PfGW456L13_1157 0.69 -1.1
1,288,823 - PfGW456L13_1157 0.69 -2.6
1,288,823 - PfGW456L13_1157 0.69 -0.2
1,288,919 + PfGW456L13_1157 0.79 -1.3
1,288,919 + PfGW456L13_1157 0.79 +1.3
1,288,919 + PfGW456L13_1157 0.79 -0.1
1,288,919 + PfGW456L13_1157 0.79 -0.8
1,288,927 - PfGW456L13_1157 0.80 +0.9
1,288,927 - PfGW456L13_1157 0.80 +0.2
1,289,075 + +0.1
1,289,075 + -0.3
1,289,076 - -2.1
1,289,116 + +1.0
1,289,195 + +0.6
1,289,220 - +3.0
1,289,220 - -1.7
1,289,237 + +1.8
1,289,237 + +1.2
1,289,237 + +1.1
1,289,238 - +0.3
1,289,241 + +0.8
1,289,241 + -1.2
1,289,241 + -0.3
1,289,241 + +0.4
1,289,241 + +0.2
1,289,241 + +2.2
1,289,242 - -2.9
1,289,242 - +2.1
1,289,242 - +1.3
1,289,242 - +0.3
1,289,242 - +0.6
1,289,242 - +0.9
1,289,245 + +0.0
1,289,245 + +1.7
1,289,245 + -1.9
1,289,246 - -0.5
1,289,246 - -0.4
1,289,246 - -0.9
1,289,250 - -0.3
1,289,379 - -1.6
1,289,379 - -2.1
1,289,379 - +1.0
1,289,462 + PfGW456L13_1158 0.14 +0.1
1,289,463 - PfGW456L13_1158 0.14 -0.1
1,289,463 - PfGW456L13_1158 0.14 +1.0
1,289,506 + PfGW456L13_1158 0.17 +0.2
1,289,639 + PfGW456L13_1158 0.28 +0.3
1,289,639 + PfGW456L13_1158 0.28 +1.0
1,289,639 + PfGW456L13_1158 0.28 +1.3
1,289,639 + PfGW456L13_1158 0.28 +0.5
1,289,640 - PfGW456L13_1158 0.28 +1.5
1,289,640 - PfGW456L13_1158 0.28 -4.2
1,289,640 - PfGW456L13_1158 0.28 -0.3
1,289,692 + PfGW456L13_1158 0.32 -3.1
1,289,692 + PfGW456L13_1158 0.32 -0.3
1,289,892 + PfGW456L13_1158 0.48 +0.2
1,289,951 + PfGW456L13_1158 0.52 -0.2
1,289,952 - PfGW456L13_1158 0.52 +0.9
1,289,952 - PfGW456L13_1158 0.52 -2.3
1,289,952 - PfGW456L13_1158 0.52 +0.7
1,290,081 + PfGW456L13_1158 0.62 +1.1
1,290,081 + PfGW456L13_1158 0.62 +0.3
1,290,081 + PfGW456L13_1158 0.62 +1.0
1,290,081 + PfGW456L13_1158 0.62 +1.1
1,290,082 - PfGW456L13_1158 0.62 +0.5
1,290,082 - PfGW456L13_1158 0.62 -1.1
1,290,082 - PfGW456L13_1158 0.62 +0.7
1,290,082 - PfGW456L13_1158 0.62 -1.9
1,290,459 + -4.2
1,290,460 - +0.2
1,290,460 - -0.9
1,290,580 + +0.4
1,290,580 + -0.9
1,290,580 + +0.5
1,290,580 + -0.8
1,290,580 + -0.8
1,290,580 + +0.6
1,290,581 - -2.4
1,290,581 - +0.3
1,290,581 - +0.6
1,290,608 + +0.7
1,290,608 + -0.2
1,290,608 + -0.7
1,290,608 + -1.1
1,290,608 + -0.3
1,290,609 - +0.8
1,290,701 + -1.6
1,290,701 + +2.7
1,290,712 + -1.4
1,290,713 - +0.3
1,290,988 - PfGW456L13_1159 0.42 +0.0
1,291,018 + PfGW456L13_1159 0.51 +1.1
1,291,019 - PfGW456L13_1159 0.52 +1.1
1,291,053 + PfGW456L13_1159 0.62 +2.7
1,291,053 + PfGW456L13_1159 0.62 -2.3
1,291,054 - PfGW456L13_1159 0.63 +1.3
1,291,054 - PfGW456L13_1159 0.63 +1.6
1,291,054 - PfGW456L13_1159 0.63 -0.3
1,291,054 - PfGW456L13_1159 0.63 +0.6
1,291,099 + PfGW456L13_1159 0.77 +0.5
1,291,099 + PfGW456L13_1159 0.77 +0.4
1,291,099 + PfGW456L13_1159 0.77 -2.0
1,291,099 + PfGW456L13_1159 0.77 -0.5
1,291,099 + PfGW456L13_1159 0.77 +0.3
1,291,099 + PfGW456L13_1159 0.77 +1.2
1,291,099 + PfGW456L13_1159 0.77 -0.1
1,291,099 + PfGW456L13_1159 0.77 -0.6
1,291,099 + PfGW456L13_1159 0.77 +0.9
1,291,099 + PfGW456L13_1159 0.77 +0.2
1,291,099 + PfGW456L13_1159 0.77 -1.1
1,291,099 + PfGW456L13_1159 0.77 -1.9
1,291,099 + PfGW456L13_1159 0.77 +1.0
1,291,099 + PfGW456L13_1159 0.77 +0.5
1,291,099 + PfGW456L13_1159 0.77 +0.7
1,291,099 + PfGW456L13_1159 0.77 -1.3
1,291,099 + PfGW456L13_1159 0.77 -0.4
1,291,099 + PfGW456L13_1159 0.77 +1.3
1,291,099 + PfGW456L13_1159 0.77 +0.3
1,291,099 + PfGW456L13_1159 0.77 +0.5
1,291,099 + PfGW456L13_1159 0.77 -1.7
1,291,099 + PfGW456L13_1159 0.77 -2.7
1,291,099 + PfGW456L13_1159 0.77 +0.5
1,291,099 + PfGW456L13_1159 0.77 -0.2
1,291,100 - PfGW456L13_1159 0.77 -0.2
1,291,100 - PfGW456L13_1159 0.77 -2.2
1,291,100 - PfGW456L13_1159 0.77 -2.3
1,291,100 - PfGW456L13_1159 0.77 -0.7
1,291,100 - PfGW456L13_1159 0.77 -1.2
1,291,100 - -0.7
1,291,100 - PfGW456L13_1159 0.77 -3.2
1,291,100 - +0.3
1,291,100 - PfGW456L13_1159 0.77 -0.1
1,291,100 - PfGW456L13_1159 0.77 -0.2
1,291,100 - PfGW456L13_1159 0.77 +2.1
1,291,100 - PfGW456L13_1159 0.77 -1.8
1,291,100 - PfGW456L13_1159 0.77 -1.6
1,291,100 - PfGW456L13_1159 0.77 +0.7
1,291,100 - PfGW456L13_1159 0.77 +1.2
1,291,100 - PfGW456L13_1159 0.77 +1.6
1,291,100 - PfGW456L13_1159 0.77 +0.4
1,291,100 - PfGW456L13_1159 0.77 +0.3
1,291,100 - PfGW456L13_1159 0.77 +1.8
1,291,100 - PfGW456L13_1159 0.77 +0.5
1,291,100 - PfGW456L13_1159 0.77 +0.9
1,291,100 - PfGW456L13_1159 0.77 +1.2
1,291,100 - PfGW456L13_1159 0.77 -0.5
1,291,100 - PfGW456L13_1159 0.77 +2.8
1,291,160 + +0.2
1,291,160 + +0.6
1,291,161 - +0.1
1,291,161 - -2.4
1,291,163 + -2.4
1,291,163 + -1.3
1,291,163 + +1.8
1,291,163 + +1.0
1,291,163 + -0.2
1,291,163 + +0.4
1,291,163 + -1.0
1,291,163 + +1.1
1,291,163 + +0.7
1,291,163 + -0.6
1,291,163 + -1.3
1,291,163 + -0.9
1,291,163 + -1.3
1,291,164 - -1.1
1,291,164 - -0.1
1,291,164 - +0.2
1,291,164 - -2.1
1,291,164 - -0.3
1,291,164 - +1.0
1,291,164 - +1.0
1,291,164 - +1.3
1,291,226 + PfGW456L13_1160 0.19 +0.5
1,291,226 + PfGW456L13_1160 0.19 -0.1
1,291,226 + PfGW456L13_1160 0.19 -2.1
1,291,226 + PfGW456L13_1160 0.19 -0.1
1,291,226 + PfGW456L13_1160 0.19 +1.0
1,291,226 + PfGW456L13_1160 0.19 -0.6
1,291,226 + PfGW456L13_1160 0.19 -0.1
1,291,227 - PfGW456L13_1160 0.19 +1.7
1,291,227 - PfGW456L13_1160 0.19 -0.7
1,291,227 - PfGW456L13_1160 0.19 -0.2
1,291,227 - PfGW456L13_1160 0.19 +0.1
1,291,227 - PfGW456L13_1160 0.19 -0.4
1,291,233 + PfGW456L13_1160 0.21 +0.1
1,291,233 + PfGW456L13_1160 0.21 -1.1
1,291,367 + PfGW456L13_1160 0.63 +0.7
1,291,476 + +0.2
1,291,477 - +0.0
1,291,525 + +0.1
1,291,525 + +2.4
1,291,525 + -0.1
1,291,525 + +0.4
1,291,526 - +0.4
1,291,532 - +0.3

Or see this region's nucleotide sequence