Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_114

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_112 and PfGW456L13_113 are separated by 23 nucleotidesPfGW456L13_113 and PfGW456L13_114 are separated by 29 nucleotidesPfGW456L13_114 and PfGW456L13_115 are separated by 173 nucleotides PfGW456L13_112 - Urease accessory protein UreF, at 129,912 to 130,586 _112 PfGW456L13_113 - Urease accessory protein UreG, at 130,610 to 131,224 _113 PfGW456L13_114 - HupE-UreJ family metal transporter, at 131,254 to 131,826 _114 PfGW456L13_115 - Mannose-6-phosphate isomerase (EC 5.3.1.8), at 132,000 to 133,133 _115 Position (kb) 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 130.544 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.544 kb on + strandat 130.545 kb on - strandat 130.563 kb on + strandat 130.595 kb on - strandat 130.595 kb on - strandat 130.595 kb on - strandat 130.706 kb on + strand, within PfGW456L13_113at 130.707 kb on - strand, within PfGW456L13_113at 130.707 kb on - strand, within PfGW456L13_113at 130.707 kb on - strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strand, within PfGW456L13_113at 130.736 kb on + strandat 130.736 kb on + strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.737 kb on - strand, within PfGW456L13_113at 130.911 kb on + strand, within PfGW456L13_113at 130.911 kb on + strand, within PfGW456L13_113at 130.912 kb on - strand, within PfGW456L13_113at 130.973 kb on + strand, within PfGW456L13_113at 130.973 kb on + strand, within PfGW456L13_113at 130.973 kb on + strand, within PfGW456L13_113at 130.973 kb on + strand, within PfGW456L13_113at 130.974 kb on - strand, within PfGW456L13_113at 130.974 kb on - strand, within PfGW456L13_113at 130.974 kb on - strand, within PfGW456L13_113at 131.233 kb on + strandat 131.233 kb on + strandat 131.233 kb on + strandat 131.233 kb on + strandat 131.234 kb on - strandat 131.469 kb on + strand, within PfGW456L13_114at 131.469 kb on + strand, within PfGW456L13_114at 131.469 kb on + strand, within PfGW456L13_114at 131.469 kb on + strand, within PfGW456L13_114at 131.469 kb on + strand, within PfGW456L13_114at 131.469 kb on + strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.470 kb on - strand, within PfGW456L13_114at 131.680 kb on + strand, within PfGW456L13_114at 131.681 kb on - strand, within PfGW456L13_114at 131.681 kb on - strand, within PfGW456L13_114at 131.681 kb on - strand, within PfGW456L13_114at 131.888 kb on + strandat 131.888 kb on + strandat 131.889 kb on - strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.890 kb on + strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.891 kb on - strandat 131.959 kb on - strandat 131.959 kb on - strandat 132.132 kb on + strand, within PfGW456L13_115at 132.132 kb on + strand, within PfGW456L13_115at 132.133 kb on - strand, within PfGW456L13_115at 132.133 kb on - strand, within PfGW456L13_115at 132.133 kb on - strand, within PfGW456L13_115at 132.207 kb on + strand, within PfGW456L13_115at 132.207 kb on + strand, within PfGW456L13_115at 132.207 kb on + strand, within PfGW456L13_115at 132.207 kb on + strand, within PfGW456L13_115at 132.207 kb on + strand, within PfGW456L13_115at 132.207 kb on + strand, within PfGW456L13_115at 132.208 kb on - strand, within PfGW456L13_115at 132.208 kb on - strand, within PfGW456L13_115at 132.208 kb on - strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.318 kb on + strand, within PfGW456L13_115at 132.319 kb on - strand, within PfGW456L13_115at 132.319 kb on - strand, within PfGW456L13_115at 132.366 kb on + strand, within PfGW456L13_115at 132.366 kb on + strand, within PfGW456L13_115at 132.366 kb on + strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.367 kb on - strand, within PfGW456L13_115at 132.402 kb on + strand, within PfGW456L13_115at 132.403 kb on - strand, within PfGW456L13_115at 132.496 kb on - strand, within PfGW456L13_115at 132.496 kb on - strand, within PfGW456L13_115at 132.634 kb on + strand, within PfGW456L13_115at 132.635 kb on - strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.744 kb on + strand, within PfGW456L13_115at 132.745 kb on - strand, within PfGW456L13_115at 132.745 kb on - strand, within PfGW456L13_115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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130,544 + -0.0
130,544 + +0.4
130,544 + +0.6
130,544 + -4.5
130,544 + -0.5
130,545 - -1.8
130,563 + -3.5
130,595 - +0.4
130,595 - -0.3
130,595 - -0.0
130,706 + PfGW456L13_113 0.16 -1.2
130,707 - PfGW456L13_113 0.16 -0.2
130,707 - PfGW456L13_113 0.16 -3.4
130,707 - PfGW456L13_113 0.16 +0.8
130,736 + PfGW456L13_113 0.20 -0.0
130,736 + PfGW456L13_113 0.20 -1.3
130,736 + PfGW456L13_113 0.20 -1.0
130,736 + PfGW456L13_113 0.20 -0.4
130,736 + +1.7
130,736 + PfGW456L13_113 0.20 -1.2
130,737 - PfGW456L13_113 0.21 +0.1
130,737 - PfGW456L13_113 0.21 -0.2
130,737 - PfGW456L13_113 0.21 +0.6
130,737 - PfGW456L13_113 0.21 +0.7
130,737 - PfGW456L13_113 0.21 -3.0
130,737 - PfGW456L13_113 0.21 +0.2
130,737 - PfGW456L13_113 0.21 -1.9
130,737 - PfGW456L13_113 0.21 -1.0
130,737 - PfGW456L13_113 0.21 +0.4
130,737 - PfGW456L13_113 0.21 +0.3
130,911 + PfGW456L13_113 0.49 -0.6
130,911 + PfGW456L13_113 0.49 -0.7
130,912 - PfGW456L13_113 0.49 -1.1
130,973 + PfGW456L13_113 0.59 +1.1
130,973 + PfGW456L13_113 0.59 +1.1
130,973 + PfGW456L13_113 0.59 +1.6
130,973 + PfGW456L13_113 0.59 +0.2
130,974 - PfGW456L13_113 0.59 -0.6
130,974 - PfGW456L13_113 0.59 -0.5
130,974 - PfGW456L13_113 0.59 -0.9
131,233 + +0.1
131,233 + -0.8
131,233 + -3.4
131,233 + -2.4
131,234 - -0.2
131,469 + PfGW456L13_114 0.38 +0.0
131,469 + PfGW456L13_114 0.38 +0.3
131,469 + PfGW456L13_114 0.38 +0.7
131,469 + PfGW456L13_114 0.38 -0.4
131,469 + PfGW456L13_114 0.38 +0.9
131,469 + PfGW456L13_114 0.38 +0.3
131,470 - PfGW456L13_114 0.38 -0.5
131,470 - PfGW456L13_114 0.38 -0.2
131,470 - PfGW456L13_114 0.38 -0.0
131,470 - PfGW456L13_114 0.38 -2.7
131,470 - PfGW456L13_114 0.38 +0.7
131,470 - PfGW456L13_114 0.38 +1.9
131,470 - PfGW456L13_114 0.38 -3.7
131,680 + PfGW456L13_114 0.74 +1.7
131,681 - PfGW456L13_114 0.75 +0.5
131,681 - PfGW456L13_114 0.75 -1.7
131,681 - PfGW456L13_114 0.75 +0.2
131,888 + -2.4
131,888 + -0.3
131,889 - -0.8
131,890 + +2.3
131,890 + -3.3
131,890 + -1.4
131,890 + -0.6
131,890 + +0.8
131,890 + +0.4
131,890 + +0.1
131,890 + -0.5
131,891 - +0.2
131,891 - -3.1
131,891 - -0.2
131,891 - +1.1
131,891 - -0.1
131,891 - -1.0
131,891 - +0.8
131,891 - +0.2
131,891 - -0.0
131,959 - -1.4
131,959 - +0.9
132,132 + PfGW456L13_115 0.12 +1.7
132,132 + PfGW456L13_115 0.12 -2.4
132,133 - PfGW456L13_115 0.12 +0.5
132,133 - PfGW456L13_115 0.12 +0.7
132,133 - PfGW456L13_115 0.12 +0.3
132,207 + PfGW456L13_115 0.18 -1.0
132,207 + PfGW456L13_115 0.18 -1.8
132,207 + PfGW456L13_115 0.18 +0.7
132,207 + PfGW456L13_115 0.18 -1.3
132,207 + PfGW456L13_115 0.18 -0.7
132,207 + PfGW456L13_115 0.18 +1.0
132,208 - PfGW456L13_115 0.18 +1.2
132,208 - PfGW456L13_115 0.18 +1.2
132,208 - PfGW456L13_115 0.18 -1.6
132,318 + PfGW456L13_115 0.28 +0.4
132,318 + PfGW456L13_115 0.28 +1.4
132,318 + PfGW456L13_115 0.28 +0.0
132,318 + PfGW456L13_115 0.28 +0.5
132,318 + PfGW456L13_115 0.28 +0.5
132,319 - PfGW456L13_115 0.28 +0.2
132,319 - PfGW456L13_115 0.28 +1.4
132,366 + PfGW456L13_115 0.32 +0.5
132,366 + PfGW456L13_115 0.32 -0.6
132,366 + PfGW456L13_115 0.32 -0.3
132,367 - PfGW456L13_115 0.32 +0.3
132,367 - PfGW456L13_115 0.32 -2.1
132,367 - PfGW456L13_115 0.32 +1.3
132,367 - PfGW456L13_115 0.32 +0.2
132,367 - PfGW456L13_115 0.32 -0.8
132,402 + PfGW456L13_115 0.35 +0.2
132,403 - PfGW456L13_115 0.36 +0.4
132,496 - PfGW456L13_115 0.44 +1.0
132,496 - PfGW456L13_115 0.44 +0.9
132,634 + PfGW456L13_115 0.56 -0.0
132,635 - PfGW456L13_115 0.56 +0.3
132,744 + PfGW456L13_115 0.66 +1.0
132,744 + PfGW456L13_115 0.66 +0.6
132,744 + PfGW456L13_115 0.66 -0.1
132,744 + PfGW456L13_115 0.66 -2.6
132,744 + PfGW456L13_115 0.66 +0.2
132,745 - PfGW456L13_115 0.66 -0.2
132,745 - PfGW456L13_115 0.66 +0.6

Or see this region's nucleotide sequence